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Multimodal Radiopathomics Signature for Prediction of Response to Immunotherapy-based Combination Therapy in Gastric Cancer Using Interpretable Machine Learning.

Huang W, Wang X, Zhong R, Li Z, Zhou K, Lyu Q, Han JE, Chen T, Islam MT, Yuan Q, Ahmad MU, Chen S, Chen C, Huang J, Xie J, Shen Y, Xiong W, Shen L, Xu Y, Yang F, Xu Z, Li G, Jiang Y

pubmed logopapersJul 15 2025
Immunotherapy has become a cornerstone in the treatment of advanced gastric cancer (GC). However, identifying reliable predictive biomarkers remains a considerable challenge. This study demonstrates the potential of integrating multimodal baseline data, including computed tomography scan images and digital H&E-stained pathology images, with biological interpretation to predict the response to immunotherapy-based combination therapy using a multicenter cohort of 298 GC patients. By employing seven machine learning approaches, we developed a radiopathomics signature (RPS) to predict treatment response and stratify prognostic risk in GC. The RPS demonstrated area under the receiver-operating-characteristic curves (AUCs) of 0.978 (95% CI, 0.950-1.000), 0.863 (95% CI, 0.744-0.982), and 0.822 (95% CI, 0.668-0.975) in the training, internal validation, and external validation cohorts, respectively, outperforming conventional biomarkers such as CPS, MSI-H, EBV, and HER-2. Kaplan-Meier analysis revealed significant differences of survival between high- and low-risk groups, especially in advanced-stage and non-surgical patients. Additionally, genetic analyses revealed that the RPS correlates with enhanced immune regulation pathways and increased infiltration of memory B cells. The interpretable RPS provides accurate predictions for treatment response and prognosis in GC and holds potential for guiding more precise, patient-specific treatment strategies while offering insights into immune-related mechanisms.

Assessing MRI-based Artificial Intelligence Models for Preoperative Prediction of Microvascular Invasion in Hepatocellular Carcinoma: A Systematic Review and Meta-analysis.

Han X, Shan L, Xu R, Zhou J, Lu M

pubmed logopapersJul 15 2025
To evaluate the performance of magnetic resonance imaging (MRI)-based artificial intelligence (AI) in the preoperative prediction of microvascular invasion (MVI) in patients with hepatocellular carcinoma (HCC). A systematic search of PubMed, Embase, and Web of Science was conducted up to May 2025, following PRISMA guidelines. Studies using MRI-based AI models with histopathologically confirmed MVI were included. Study quality was assessed using the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) tool and the Grading of Recommendations Assessment, Development and Evaluation (GRADE) framework. Statistical synthesis used bivariate random-effects models. Twenty-nine studies were included, totaling 2838 internal and 1161 external validation cases. Pooled internal validation showed a sensitivity of 0.81 (95% CI: 0.76-0.85), specificity of 0.82 (95% CI: 0.78-0.85), diagnostic odds ratio (DOR) of 19.33 (95% CI: 13.15-28.42), and area under the curve (AUC) of 0.88 (95% CI: 0.85-0.91). External validation yielded a comparable AUC of 0.85. Traditional machine learning methods achieved higher sensitivity than deep learning approaches in both internal and external validation cohorts (both P < 0.05). Studies incorporating both radiomics and clinical features demonstrated superior sensitivity and specificity compared to radiomics-only models (P < 0.01). MRI-based AI demonstrates high performance for preoperative prediction of MVI in HCC, particularly for MRI-based models that combine multimodal imaging and clinical variables. However, substantial heterogeneity and low GRADE levels may affect the strength of the evidence, highlighting the need for methodological standardization and multicenter prospective validation to ensure clinical applicability.

Preoperative prediction value of 2.5D deep learning model based on contrast-enhanced CT for lymphovascular invasion of gastric cancer.

Sun X, Wang P, Ding R, Ma L, Zhang H, Zhu L

pubmed logopapersJul 15 2025
To develop and validate artificial intelligence models based on contrast-enhanced CT(CECT) images of venous phase using deep learning (DL) and Radiomics approaches to predict lymphovascular invasion in gastric cancer prior to surgery. We retrospectively analyzed data from 351 gastric cancer patients, randomly splitting them into two cohorts (training cohort, n = 246; testing cohort, n = 105) in a 7:3 ratio. The tumor region of interest (ROI) was outlined on venous phase CT images as the input for the development of radiomics, 2D and 3D DL models (DL2D and DL3D). Of note, by centering the analysis on the tumor's maximum cross-section and incorporating seven adjacent 2D images, we generated stable 2.5D data to establish a multi-instance learning (MIL) model. Meanwhile, the clinical and feature-combined models which integrated traditional CT enhancement parameters (Ratio), radiomics, and MIL features were also constructed. Models' performance was evaluated by the area under the curve (AUC), confusion matrices, and detailed metrics, such as sensitivity and specificity. A nomogram based on the combined model was established and applied to clinical practice. The calibration curve was used to evaluate the consistency between the predicted LVI of each model and the actual LVI of gastric cancer, and the decision curve analysis (DCA) was used to evaluate the net benefit of each model. Among the developed models, 2.5D MIL and combined models exhibited the superior performance in comparison to the clinical model, the radiomics model, the DL2D model, and the DL3D model as evidenced by the AUC values of 0.820, 0.822, 0.748, 0.725, 0.786, and 0.711 on testing set, respectively. Additionally, the 2.5D MIL and combined models also showed good calibration for LVI prediction, and could provide a net clinical benefit when the threshold probability ranged from 0.31 to 0.98, and from 0.28 to 0.84, indicating their clinical usefulness. The MIL and combined models highlight their performance in predicting preoperative lymphovascular invasion in gastric cancer, offering valuable insights for clinicians in selecting appropriate treatment options for gastric cancer patients.

Identification of high-risk hepatoblastoma in the CHIC risk stratification system based on enhanced CT radiomics features.

Yang Y, Si J, Zhang K, Li J, Deng Y, Wang F, Liu H, He L, Chen X

pubmed logopapersJul 15 2025
Survival of patients with high-risk hepatoblastoma remains low, and early identification of high-risk hepatoblastoma is critical. To investigate the clinical value of contrast-enhanced computed tomography (CECT) radiomics in predicting high-risk hepatoblastoma. Clinical and CECT imaging data were retrospectively collected from 162 children who were treated at our hospital and pathologically diagnosed with hepatoblastoma. Patients were categorized into high-risk and non-high-risk groups according to the Children's Hepatic Tumors International Collaboration - Hepatoblastoma Study (CHIC-HS). Subsequently, these cases were randomized into training and test groups in a ratio of 7:3. The region of interest (ROI) was first outlined in the pre-treatment venous images, and subsequently the best features were extracted and filtered, and the radiomics model was built by three machine learning methods: namely, Bagging Decision Tree (BDT), Logistic Regression (LR), and Stochastic Gradient Descent (SGD). The AUC, 95 % CI, and accuracy of the model were calculated, and the model performance was evaluated by the DeLong test. The AUCs of the Bagging decision tree model were 0.966 (95 % CI: 0.938-0.994) and 0.875 (95 % CI: 0.77-0.98) for the training and test sets, respectively, with accuracies of 0.841 and 0.816,respectively. The logistic regression model has AUCs of 0.901 (95 % CI: 0.839-0.963) and 0.845 (95 % CI: 0.721-0.968) for the training and test sets, with accuracies of 0.788 and 0.735, respectively. The stochastic gradient descent model has AUCs of 0.788 (95 % CI: 0.712 -0.863) and 0.742 (95 % CI: 0.627-0.857) with accuracies of 0.735 and 0.653, respectively. CECT-based imaging histology identifies high-risk hepatoblastomas and may provide additional imaging biomarkers for identifying high-risk hepatoblastomas.

Fetal-Net: enhancing Maternal-Fetal ultrasound interpretation through Multi-Scale convolutional neural networks and Transformers.

Islam U, Ali YA, Al-Razgan M, Ullah H, Almaiah MA, Tariq Z, Wazir KM

pubmed logopapersJul 15 2025
Ultrasound imaging plays an important role in fetal growth and maternal-fetal health evaluation, but due to the complicated anatomy of the fetus and image quality fluctuation, its interpretation is quite challenging. Although deep learning include Convolution Neural Networks (CNNs) have been promising, they have largely been limited to one task or the other, such as the segmentation or detection of fetal structures, thus lacking an integrated solution that accounts for the intricate interplay between anatomical structures. To overcome these limitations, Fetal-Net-a new deep learning architecture that integrates Multi-Scale-CNNs and transformer layers-was developed. The model was trained on a large, expertly annotated set of more than 12,000 ultrasound images across different anatomical planes for effective identification of fetal structures and anomaly detection. Fetal-Net achieved excellent performance in anomaly detection, with precision (96.5%), accuracy (97.5%), and recall (97.8%) showed robustness factor against various imaging settings, making it a potent means of augmenting prenatal care through refined ultrasound image interpretation.

Non-invasive liver fibrosis screening on CT images using radiomics.

Yoo JJ, Namdar K, Carey S, Fischer SE, McIntosh C, Khalvati F, Rogalla P

pubmed logopapersJul 15 2025
To develop a radiomics machine learning model for detecting liver fibrosis on CT images of the liver. With Ethics Board approval, 169 patients (68 women, 101 men; mean age, 51.2 years ± 14.7 [SD]) underwent an ultrasound-guided liver biopsy with simultaneous CT acquisitions without and following intravenous contrast material administration. Radiomic features were extracted from two regions of interest (ROIs) on the CT images, one placed at the biopsy site and another distant from the biopsy site. A development cohort, which was split further into training and validation cohorts across 100 trials, was used to determine the optimal combinations of contrast, normalization, machine learning model, and radiomic features for liver fibrosis detection based on their Area Under the Receiver Operating Characteristic curve (AUC) on the validation cohort. The optimal combinations were then used to develop one final liver fibrosis model which was evaluated on a test cohort. When averaging the AUC across all combinations, non-contrast enhanced (NC) CT (AUC, 0.6100; 95% CI: 0.5897, 0.6303) outperformed contrast-enhanced CT (AUC, 0.5680; 95% CI: 0.5471, 0.5890). The most effective model was found to be a logistic regression model with input features of maximum, energy, kurtosis, skewness, and small area high gray level emphasis extracted from non-contrast enhanced NC CT normalized using Gamma correction with γ = 1.5 (AUC, 0.7833; 95% CI: 0.7821, 0.7845). The presented radiomics-based logistic regression model holds promise as a non-invasive detection tool for subclinical, asymptomatic liver fibrosis. The model may serve as an opportunistic liver fibrosis screening tool when operated in the background during routine CT examinations covering liver parenchyma. The final liver fibrosis detection model is made publicly available at: https://github.com/IMICSLab/RadiomicsLiverFibrosisDetection .

<sup>18</sup>F-FDG PET-based liver segmentation using deep-learning.

Kaneko Y, Miwa K, Yamao T, Miyaji N, Nishii R, Yamazaki K, Nishikawa N, Yusa M, Higashi T

pubmed logopapersJul 15 2025
Organ segmentation using <sup>18</sup>F-FDG PET images alone has not been extensively explored. Segmentation based methods based on deep learning (DL) have traditionally relied on CT or MRI images, which are vulnerable to alignment issues and artifacts. This study aimed to develop a DL approach for segmenting the entire liver based solely on <sup>18</sup>F-FDG PET images. We analyzed data from 120 patients who were assessed using <sup>18</sup>F-FDG PET. A three-dimensional (3D) U-Net model from nnUNet and preprocessed PET images served as DL and input images, respectively, for the model. The model was trained with 5-fold cross-validation on data from 100 patients, and segmentation accuracy was evaluated on an independent test set of 20 patients. Accuracy was assessed using Intersection over Union (IoU), Dice coefficient, and liver volume. Image quality was evaluated using mean (SUVmean) and maximum (SUVmax) standardized uptake value and signal-to-noise ratio (SNR). The model achieved an average IoU of 0.89 and an average Dice coefficient of 0.94 based on test data from 20 patients, indicating high segmentation accuracy. No significant discrepancies in image quality metrics were identified compared with ground truth. Liver regions were accurately extracted from <sup>18</sup>F-FDG PET images which allowed rapid and stable evaluation of liver uptake in individual patients without the need for CT or MRI assessments.

Automated Whole-Liver Fat Quantification with Magnetic Resonance Imaging-Derived Proton Density Fat Fraction Map: A Prospective Study in Taiwan.

Wu CH, Yen KC, Wang LY, Hsieh PL, Wu WK, Lee PL, Liu CJ

pubmed logopapersJul 15 2025
Magnetic resonance imaging (MRI) with a proton density fat fraction (PDFF) sequence is the most accurate, noninvasive method for assessing hepatic steatosis. However, manual measurement on the PDFF map is time-consuming. This study aimed to validate automated whole-liver fat quantification for assessing hepatic steatosis with MRI-PDFF. In this prospective study, 80 patients were enrolled from August 2020 to January 2023. Baseline MRI-PDFF and magnetic resonance spectroscopy (MRS) data were collected. The analysis of MRI-PDFF included values from automated whole-liver segmentation (autoPDFF) and the average value from measurements taken from eight segments (avePDFF). Twenty patients with ≥10% autoPDFF values who received 24 weeks of exercise training were also collected for the chronologic evaluation. The correlation and concordance coefficients (r and ρ) among the values and differences were calculated. There were strong correlations between autoPDFF versus avePDFF, autoPDFF versus MRS, and avePDFF versus MRS (r=0.963, r=0.955, and r=0.977, all p<0.001). The autoPDFF values were also highly concordant with the avePDFF and MRS values (ρ=0.941 and ρ=0.942). The autoPDFF, avePDFF, and MRS values consistently decreased after 24 weeks of exercise. The change in autoPDFF was also highly correlated with the changes in avePDFF and MRS (r=0.961 and r=0.870, all p<0.001). Automated whole-liver fat quantification might be feasible for clinical trials and practice, yielding values with high correlations and concordance with the time-consuming manual measurements from the PDFF map and the values from the highly complex processing of MRS (ClinicalTrials.gov identifier: NCT04463667).

Interpretable Prediction of Lymph Node Metastasis in Rectal Cancer MRI Using Variational Autoencoders

Benjamin Keel, Aaron Quyn, David Jayne, Maryam Mohsin, Samuel D. Relton

arxiv logopreprintJul 15 2025
Effective treatment for rectal cancer relies on accurate lymph node metastasis (LNM) staging. However, radiological criteria based on lymph node (LN) size, shape and texture morphology have limited diagnostic accuracy. In this work, we investigate applying a Variational Autoencoder (VAE) as a feature encoder model to replace the large pre-trained Convolutional Neural Network (CNN) used in existing approaches. The motivation for using a VAE is that the generative model aims to reconstruct the images, so it directly encodes visual features and meaningful patterns across the data. This leads to a disentangled and structured latent space which can be more interpretable than a CNN. Models are deployed on an in-house MRI dataset with 168 patients who did not undergo neo-adjuvant treatment. The post-operative pathological N stage was used as the ground truth to evaluate model predictions. Our proposed model 'VAE-MLP' achieved state-of-the-art performance on the MRI dataset, with cross-validated metrics of AUC 0.86 +/- 0.05, Sensitivity 0.79 +/- 0.06, and Specificity 0.85 +/- 0.05. Code is available at: https://github.com/benkeel/Lymph_Node_Classification_MIUA.

Comparison of diagnostic performance between manual diagnosis following PROMISE V2 and aPROMISE utilizing Ga/F-PSMA PET/CT.

Enei Y, Yanagisawa T, Okada A, Kuruma H, Okazaki C, Watanabe K, Lenzo NP, Kimura T, Miki K

pubmed logopapersJul 15 2025
Automated PROMISE (aPROMISE), which is an artificial intelligence-supported software for prostate-specific membrane antigen (PSMA) PET/CT based on PROMISE V2, has demonstrated diagnostic utility with better correspondence rates compared to manual diagnosis. However, previous studies have consistently utilized <sup>18</sup>F-PSMA PET/CT. Therefore, we investigated the diagnostic utility of aPROMISE using both <sup>18</sup>F- and <sup>68</sup> Ga-PSMA PET/CT of Japanese patients with metastatic prostate cancer (mPCa). We retrospectively evaluated 21 PSMA PET/CT images (<sup>68</sup> Ga-PSMA PET/CT: n = 12, <sup>18</sup>F-PSMA PET/CT: n = 9) from 21 patients with mPCa. A single, well-experienced nuclear radiologist performed manual diagnosis following PROMISE V2 and subsequently performed aPROMISE-assisted diagnosis to assess miTNM and details of metastatic sites. We compared the diagnostic time and correspondence rates of miTNM diagnosis between manual and aPROMISE-assisted diagnoses. Additionally, we investigated the differences in diagnostic performance between the two radioisotopes. aPROMISE-assisted diagnosis was significantly associated with shorter median diagnostic time compared to manual diagnosis (427 s [IQR: 370-834] vs. 1,114 s [IQR: 922-1291], p < 0.001). The time reduction with aPROMISE-assisted diagnosis was particularly notable when using <sup>68</sup> Ga-PSMA PET/CT. aPROMISE had high diagnostic accuracy with 100% sensitivity for miT, M1a, and M1b stages. Notably, for M1b stages, aPROMISE achieved 100% sensitivity and specificity, regardless of the type of radioisotope used. However, aPROMISE was misinterpreted in lymph node detection in some cases and missed five visceral metastases (2 adrenal and 3 liver), resulting in lower sensitivity for miM1c stage (63%). In addition to detecting metastatic sites, aPROMISE successfully provided detailed metrics, including the number of metastatic lesions, total metastatic volume, and SUV mean. Despite the preliminary nature of the study, aPROMISE-assisted diagnosis significantly reduces diagnostic time and achieves satisfactory accuracy compared to manual diagnosis. While aPROMISE is effective in detecting bone metastases, its limitations in identifying lymph node and visceral metastases must be carefully addressed. This study supports the utility of aPROMISE in Japanese patients with mPCa and underscores the need for further validation in larger cohorts.
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