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VesselSDF: Distance Field Priors for Vascular Network Reconstruction

Salvatore Esposito, Daniel Rebain, Arno Onken, Changjian Li, Oisin Mac Aodha

arxiv logopreprintJun 19 2025
Accurate segmentation of vascular networks from sparse CT scan slices remains a significant challenge in medical imaging, particularly due to the thin, branching nature of vessels and the inherent sparsity between imaging planes. Existing deep learning approaches, based on binary voxel classification, often struggle with structural continuity and geometric fidelity. To address this challenge, we present VesselSDF, a novel framework that leverages signed distance fields (SDFs) for robust vessel reconstruction. Our method reformulates vessel segmentation as a continuous SDF regression problem, where each point in the volume is represented by its signed distance to the nearest vessel surface. This continuous representation inherently captures the smooth, tubular geometry of blood vessels and their branching patterns. We obtain accurate vessel reconstructions while eliminating common SDF artifacts such as floating segments, thanks to our adaptive Gaussian regularizer which ensures smoothness in regions far from vessel surfaces while producing precise geometry near the surface boundaries. Our experimental results demonstrate that VesselSDF significantly outperforms existing methods and preserves vessel geometry and connectivity, enabling more reliable vascular analysis in clinical settings.

Two-stage convolutional neural network for segmentation and detection of carotid web on CT angiography.

Kuang H, Tan X, Bala F, Huang J, Zhang J, Alhabli I, Benali F, Singh N, Ganesh A, Coutts SB, Almekhlafi MA, Goyal M, Hill MD, Qiu W, Menon BK

pubmed logopapersJun 16 2025
Carotid web (CaW) is a risk factor for ischemic stroke, mainly in young patients with stroke of undetermined etiology. Its detection is challenging, especially among non-experienced physicians. We included patients with CaW from six international trials and registries of patients with acute ischemic stroke. Identification and manual segmentations of CaW were performed by three trained radiologists. We designed a two-stage segmentation strategy based on a convolutional neural network (CNN). At the first stage, the two carotid arteries were segmented using a U-shaped CNN. At the second stage, the segmentation of the CaW was first confined to the vicinity of the carotid arteries. Then, the carotid bifurcation region was localized by the proposed carotid bifurcation localization algorithm followed by another U-shaped CNN. A volume threshold based on the derived CaW manual segmentation statistics was then used to determine whether or not CaW was present. We included 58 patients (median (IQR) age 59 (50-75) years, 60% women). The Dice similarity coefficient and 95th percentile Hausdorff distance between manually segmented CaW and the algorithm segmented CaW were 63.20±19.03% and 1.19±0.9 mm, respectively. Using a volume threshold of 5 mm<sup>3</sup>, binary classification detection metrics for CaW on a single artery were as follows: accuracy: 92.2% (95% CI 87.93% to 96.55%), precision: 94.83% (95% CI 88.68% to 100.00%), sensitivity: 90.16% (95% CI 82.16% to 96.97%), specificity: 94.55% (95% CI 88.0% to 100.0%), F1 measure: 0.9244 (95% CI 0.8679 to 0.9692), area under the curve: 0.9235 (95%CI 0.8726 to 0.9688). The proposed two-stage method enables reliable segmentation and detection of CaW from head and neck CT angiography.

Feasibility of Ultralow-Dose CT With Deep-Learning Reconstruction for Aneurysm Diameter Measurement in Post-EVAR Follow-Up: A Prospective Comparative Study With Conventional CT.

Matsushiro K, Okada T, Sasaki K, Gentsu T, Ueshima E, Sofue K, Yamanaka K, Hori M, Yamaguchi M, Sugimoto K, Okada K, Murakami T

pubmed logopapersJun 16 2025
We conducted a prospective study to evaluate the usefulness of ultralow-dose computed tomography (ULD-CT) with deep-learning reconstruction (DLR) compared with conventional standard-dose CT (SD-CT) for post-endovascular aneurysm repair (EVAR) surveillance. We prospectively performed post-EVAR surveillance using ULD-CT at a single center in 44 patients after they had received SD-CT. The ULD-CT images underwent DLR, whereas the SD-CT images underwent iterative reconstruction. Three radiologists blinded to the patient information and CT conditions independently measured the aneurysmal sac diameter and evaluated the overall image quality. Bland-Altman analysis and a linear mixed-effects model were used to assess and compare the measurement accuracy between SD-CT and ULD-CT. The mean CT dose index volume and dose-length product were significantly lower for ULD-CT (1.0 ± 0.3 mGy and 71.4 ± 26.5 mGy•cm) than that for SD-CT (6.9 ± 0.9 mGy and 500.9 ± 96.0 mGy•cm; p<0.001). The mean short diameters of the aneurysmal sac measured by the 3 observers were 46.7 ± 10.8 mm on SD-CT and 46.3 ± 10.8 mm on ULD-CT. The mean difference in the short diameter of the aneurysmal sac between ULD-CT and SD-CT was -0.37 mm (95% confidence interval, -0.6 to -0.12 mm). The intraobserver limits of agreement (LOA) for measurements by ULD-CT and SD-CT were -3.5 to 2.6, -2.8 to 1.9, and -2.9 to 2.3 for Observers 1, 2, and 3, respectively. The pairwise LOAs for assessing interobserver agreement, such as for the differences between Observers 1 and 2 measurements in SD-CT, were mostly within the predetermined acceptable range. The mean image-quality score was lower for ULD-CT (3.3 ± 0.6) than that for SD-CT (4.5 ± 0.5; p<0.001). Aneurysmal sac diameter measurements by ULD-CT with DLR were sufficiently accurate for post-EVAR surveillance, with substantial radiation reduction versus SD-CT.Clinical ImpactDeep-learning reconstruction (DLR) is implemented as a software-based algorithm rather than requiring dedicated hardware. As such, it is expected to be integrated into standard computed tomography (CT) systems in the near future. The ultralow-dose CT (ULD-CT) with DLR evaluated in this study has the potential to become widely accessible across various institutions. This advancement could substantially reduce radiation exposure in post-endovascular aneurysm repair (EVAR) CT imaging, thereby facilitating its adoption as a standard modality for post-EVAR surveillance.

A computed tomography angiography-based radiomics model for prognostic prediction of endovascular abdominal aortic repair.

Huang S, Liu D, Deng K, Shu C, Wu Y, Zhou Z

pubmed logopapersJun 15 2025
This study aims to develop a radiomics machine learning (ML) model that uses preoperative computed tomography angiography (CTA) data to predict the prognosis of endovascular aneurysm repair (EVAR) for abdominal aortic aneurysm (AAA) patients. In this retrospective study, 164 AAA patients underwent EVAR and were categorized into shrinkage (good prognosis) or stable (poor prognosis) groups based on post-EVAR sac regression. From preoperative AAA and perivascular adipose tissue (PVAT) image, radiomics features (RFs) were extracted for model creation. Patients were split into 80 % training and 20 % test sets. A support vector machine model was constructed for prediction. Accuracy is evaluated via the area under the receiver operating characteristic curve (AUC). Demographics and comorbidities showed no significant differences between shrinkage and stable groups. The model containing 5 AAA RFs (which are original_firstorder_InterquartileRange, log-sigma-3-0-mm-3D_glrlm_GrayLevelNonUniformityNormalized, log-sigma-3-0-mm-3D_glrlm_RunPercentage, log-sigma-4-0-mm-3D_glrlm_ShortRunLowGrayLevelEmphasis, wavelet-LLH_glcm_SumEntropy) had AUCs of 0.86 (training) and 0.77 (test). The model containing 7 PVAT RFs (which are log-sigma-3-0-mm-3D_firstorder_InterquartileRange, log-sigma-3-0-mm-3D_glcm_Correlation, wavelet-LHL_firstorder_Energy, wavelet-LHL_firstorder_TotalEnergy, wavelet-LHH_firstorder_Mean, wavelet-LHH_glcm_Idmn, wavelet-LHH_glszm_GrayLevelNonUniformityNormalized) had AUCs of 0.76 (training) and 0.78 (test). Combining AAA and PVAT RFs yielded the highest accuracy: AUCs of 0.93 (training) and 0.87 (test). Radiomics-based CTA model predicts aneurysm sac regression post-EVAR in AAA patients. PVAT RFs from preoperative CTA images were closely related to AAA prognosis after EVAR, enhancing accuracy when combined with AAA RFs. This preliminary study explores a predictive model designed to assist clinicians in optimizing therapeutic strategies during clinical decision-making processes.

Radiomic Analysis of Molecular Magnetic Resonance Imaging of Aortic Atherosclerosis in Rabbits.

Lee H

pubmed logopapersJun 13 2025
Atherosclerosis involves not only the narrowing of blood vessels and plaque accumulation but also changes in plaque composition and stability, all of which are critical for disease progression. Conventional imaging techniques such as magnetic resonance angiography (MRA) and digital subtraction angiography (DSA) primarily assess luminal narrowing and plaque size, but have limited capability in identifying plaque instability and inflammation within the vascular muscle wall. This study aimed to develop and evaluate a novel imaging approach using ligand-modified nanomagnetic contrast (lmNMC) nanoprobes in combination with molecular magnetic resonance imaging (mMRI) to visualize and quantify vascular inflammation and plaque characteristics in a rabbit model of atherosclerosis. A rabbit model of atherosclerosis was established and underwent mMRI before and after administration of lmNMC nanoprobes. Radiomic features were extracted from segmented images using discrete wavelet transform (DWT) to assess spatial frequency changes and gray-level co-occurrence matrix (GLCM) analysis to evaluate textural properties. Further radiomic analysis was performed using neural network-based regression and clustering, including the application of self-organizing maps (SOMs) to validate the consistency of radiomic pattern between training and testing data. Radiomic analysis revealed significant changes in spatial frequency between pre- and post-contrast images in both the horizontal and vertical directions. GLCM analysis showed an increase in contrast from 0.08463 to 0.1021 and a slight decrease in homogeneity from 0.9593 to 0.9540. Energy values declined from 0.2256 to 0.2019, while correlation increased marginally from 0.9659 to 0.9708. Neural network regression demonstrated strong convergence between target and output coordinates. Additionally, SOM clustering revealed consistent weight locations and neighbor distances across datasets, supporting the reliability of the radiomic validation. The integration of lmNMC nanoprobes with mMRI enables detailed visualization of atherosclerotic plaques and surrounding vascular inflammation in a preclinical model. This method shows promise for enhancing the characterization of unstable plaques and may facilitate early detection of high-risk atherosclerotic lesions, potentially improving diagnostic and therapeutic strategies.

Exploring the limit of image resolution for human expert classification of vascular ultrasound images in giant cell arteritis and healthy subjects: the GCA-US-AI project.

Bauer CJ, Chrysidis S, Dejaco C, Koster MJ, Kohler MJ, Monti S, Schmidt WA, Mukhtyar CB, Karakostas P, Milchert M, Ponte C, Duftner C, de Miguel E, Hocevar A, Iagnocco A, Terslev L, Døhn UM, Nielsen BD, Juche A, Seitz L, Keller KK, Karalilova R, Daikeler T, Mackie SL, Torralba K, van der Geest KSM, Boumans D, Bosch P, Tomelleri A, Aschwanden M, Kermani TA, Diamantopoulos A, Fredberg U, Inanc N, Petzinna SM, Albarqouni S, Behning C, Schäfer VS

pubmed logopapersJun 12 2025
Prompt diagnosis of giant cell arteritis (GCA) with ultrasound is crucial for preventing severe ocular and other complications, yet expertise in ultrasound performance is scarce. The development of an artificial intelligence (AI)-based assistant that facilitates ultrasound image classification and helps to diagnose GCA early promises to close the existing gap. In the projection of the planned AI, this study investigates the minimum image resolution required for human experts to reliably classify ultrasound images of arteries commonly affected by GCA for the presence or absence of GCA. Thirty-one international experts in GCA ultrasonography participated in a web-based exercise. They were asked to classify 10 ultrasound images for each of 5 vascular segments as GCA, normal, or not able to classify. The following segments were assessed: (1) superficial common temporal artery, (2) its frontal and (3) parietal branches (all in transverse view), (4) axillary artery in transverse view, and 5) axillary artery in longitudinal view. Identical images were shown at different resolutions, namely 32 × 32, 64 × 64, 128 × 128, 224 × 224, and 512 × 512 pixels, thereby resulting in a total of 250 images to be classified by every study participant. Classification performance improved with increasing resolution up to a threshold, plateauing at 224 × 224 pixels. At 224 × 224 pixels, the overall classification sensitivity was 0.767 (95% CI, 0.737-0.796), and specificity was 0.862 (95% CI, 0.831-0.888). A resolution of 224 × 224 pixels ensures reliable human expert classification and aligns with the input requirements of many common AI-based architectures. Thus, the results of this study substantially guide projected AI development.

Vector Representations of Vessel Trees

James Batten, Michiel Schaap, Matthew Sinclair, Ying Bai, Ben Glocker

arxiv logopreprintJun 11 2025
We introduce a novel framework for learning vector representations of tree-structured geometric data focusing on 3D vascular networks. Our approach employs two sequentially trained Transformer-based autoencoders. In the first stage, the Vessel Autoencoder captures continuous geometric details of individual vessel segments by learning embeddings from sampled points along each curve. In the second stage, the Vessel Tree Autoencoder encodes the topology of the vascular network as a single vector representation, leveraging the segment-level embeddings from the first model. A recursive decoding process ensures that the reconstructed topology is a valid tree structure. Compared to 3D convolutional models, this proposed approach substantially lowers GPU memory requirements, facilitating large-scale training. Experimental results on a 2D synthetic tree dataset and a 3D coronary artery dataset demonstrate superior reconstruction fidelity, accurate topology preservation, and realistic interpolations in latent space. Our scalable framework, named VeTTA, offers precise, flexible, and topologically consistent modeling of anatomical tree structures in medical imaging.

Geometric deep learning for local growth prediction on abdominal aortic aneurysm surfaces

Dieuwertje Alblas, Patryk Rygiel, Julian Suk, Kaj O. Kappe, Marieke Hofman, Christoph Brune, Kak Khee Yeung, Jelmer M. Wolterink

arxiv logopreprintJun 10 2025
Abdominal aortic aneurysms (AAAs) are progressive focal dilatations of the abdominal aorta. AAAs may rupture, with a survival rate of only 20\%. Current clinical guidelines recommend elective surgical repair when the maximum AAA diameter exceeds 55 mm in men or 50 mm in women. Patients that do not meet these criteria are periodically monitored, with surveillance intervals based on the maximum AAA diameter. However, this diameter does not take into account the complex relation between the 3D AAA shape and its growth, making standardized intervals potentially unfit. Personalized AAA growth predictions could improve monitoring strategies. We propose to use an SE(3)-symmetric transformer model to predict AAA growth directly on the vascular model surface enriched with local, multi-physical features. In contrast to other works which have parameterized the AAA shape, this representation preserves the vascular surface's anatomical structure and geometric fidelity. We train our model using a longitudinal dataset of 113 computed tomography angiography (CTA) scans of 24 AAA patients at irregularly sampled intervals. After training, our model predicts AAA growth to the next scan moment with a median diameter error of 1.18 mm. We further demonstrate our model's utility to identify whether a patient will become eligible for elective repair within two years (acc = 0.93). Finally, we evaluate our model's generalization on an external validation set consisting of 25 CTAs from 7 AAA patients from a different hospital. Our results show that local directional AAA growth prediction from the vascular surface is feasible and may contribute to personalized surveillance strategies.

A Deep Learning Model for Identifying the Risk of Mesenteric Malperfusion in Acute Aortic Dissection Using Initial Diagnostic Data: Algorithm Development and Validation.

Jin Z, Dong J, Li C, Jiang Y, Yang J, Xu L, Li P, Xie Z, Li Y, Wang D, Ji Z

pubmed logopapersJun 10 2025
Mesenteric malperfusion (MMP) is an uncommon but devastating complication of acute aortic dissection (AAD) that combines 2 life-threatening conditions-aortic dissection and acute mesenteric ischemia. The complex pathophysiology of MMP poses substantial diagnostic and management challenges. Currently, delayed diagnosis remains a critical contributor to poor outcomes because of the absence of reliable individualized risk assessment tools. This study aims to develop and validate a deep learning-based model that integrates multimodal data to identify patients with AAD at high risk of MMP. This multicenter retrospective study included 525 patients with AAD from 2 hospitals. The training and internal validation cohort consisted of 450 patients from Beijing Anzhen Hospital, whereas the external validation cohort comprised 75 patients from Nanjing Drum Tower Hospital. Three machine learning models were developed: the benchmark model using laboratory parameters, the multiorgan feature-based AAD complicating MMP (MAM) model based on computed tomography angiography images, and the integrated model combining both data modalities. Model performance was assessed using the area under the curve, accuracy, sensitivity, specificity, and Brier score. To improve interpretability, gradient-weighted class activation mapping was used to identify and visualize discriminative imaging features. Univariate and multivariate regression analyses were used to evaluate the prognostic significance of the risk score generated by the optimal model. In the external validation cohort, the integrated model demonstrated superior performance, with an area under the curve of 0.780 (95% CI 0.777-0.785), which was significantly greater than those of the benchmark model (0.586, 95% CI 0.574-0.586) and the MAM model (0.732, 95% CI 0.724-0.734). This highlights the benefits of multimodal integration over single-modality approaches. Additional classification metrics revealed that the integrated model had an accuracy of 0.760 (95% CI 0.758-0.764), a sensitivity of 0.667 (95% CI 0.659-0.675), a specificity of 0.783 (95% CI 0.781-0.788), and a Brier score of 0.143 (95% CI 0.143-0.145). Moreover, gradient-weighted class activation mapping visualizations of the MAM model revealed that during positive predictions, the model focused more on key anatomical areas, particularly the superior mesenteric artery origin and intestinal regions with characteristic gas or fluid accumulation. Univariate and multivariate analyses also revealed that the risk score derived from the integrated model was independently associated with inhospital mortality risk among patients with AAD undergoing endovascular or surgical treatment (odds ratio 1.030, 95% CI 1.004-1.056; P=.02). Our findings demonstrate that compared with unimodal approaches, an integrated deep learning model incorporating both imaging and clinical data has greater diagnostic accuracy for MMP in patients with AAD. This model may serve as a valuable tool for early risk identification, facilitating timely therapeutic decision-making. Further prospective validation is warranted to confirm its clinical utility. Chinese Clinical Registry Center ChiCTR2400086050; http://www.chictr.org.cn/showproj.html?proj=226129.

Geometric deep learning for local growth prediction on abdominal aortic aneurysm surfaces

Dieuwertje Alblas, Patryk Rygiel, Julian Suk, Kaj O. Kappe, Marieke Hofman, Christoph Brune, Kak Khee Yeung, Jelmer M. Wolterink

arxiv logopreprintJun 10 2025
Abdominal aortic aneurysms (AAAs) are progressive focal dilatations of the abdominal aorta. AAAs may rupture, with a survival rate of only 20\%. Current clinical guidelines recommend elective surgical repair when the maximum AAA diameter exceeds 55 mm in men or 50 mm in women. Patients that do not meet these criteria are periodically monitored, with surveillance intervals based on the maximum AAA diameter. However, this diameter does not take into account the complex relation between the 3D AAA shape and its growth, making standardized intervals potentially unfit. Personalized AAA growth predictions could improve monitoring strategies. We propose to use an SE(3)-symmetric transformer model to predict AAA growth directly on the vascular model surface enriched with local, multi-physical features. In contrast to other works which have parameterized the AAA shape, this representation preserves the vascular surface's anatomical structure and geometric fidelity. We train our model using a longitudinal dataset of 113 computed tomography angiography (CTA) scans of 24 AAA patients at irregularly sampled intervals. After training, our model predicts AAA growth to the next scan moment with a median diameter error of 1.18 mm. We further demonstrate our model's utility to identify whether a patient will become eligible for elective repair within two years (acc = 0.93). Finally, we evaluate our model's generalization on an external validation set consisting of 25 CTAs from 7 AAA patients from a different hospital. Our results show that local directional AAA growth prediction from the vascular surface is feasible and may contribute to personalized surveillance strategies.
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