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Cerebral ischemia detection using deep learning techniques.

Pastor-Vargas R, Antón-Munárriz C, Haut JM, Robles-Gómez A, Paoletti ME, Benítez-Andrades JA

pubmed logopapersDec 1 2025
Cerebrovascular accident (CVA), commonly known as stroke, stands as a significant contributor to contemporary mortality and morbidity rates, often leading to lasting disabilities. Early identification is crucial in mitigating its impact and reducing mortality. Non-contrast computed tomography (NCCT) remains the primary diagnostic tool in stroke emergencies due to its speed, accessibility, and cost-effectiveness. NCCT enables the exclusion of hemorrhage and directs attention to ischemic causes resulting from arterial flow obstruction. Quantification of NCCT findings employs the Alberta Stroke Program Early Computed Tomography Score (ASPECTS), which evaluates affected brain structures. This study seeks to identify early alterations in NCCT density in patients with stroke symptoms using a binary classifier distinguishing NCCT scans with and without stroke. To achieve this, various well-known deep learning architectures, namely VGG3D, ResNet3D, and DenseNet3D, validated in the ImageNet challenges, are implemented with 3D images covering the entire brain volume. The training results of these networks are presented, wherein diverse parameters are examined for optimal performance. The DenseNet3D network emerges as the most effective model, attaining a training set accuracy of 98% and a test set accuracy of 95%. The aim is to alert medical professionals to potential stroke cases in their early stages based on NCCT findings displaying altered density patterns.

Convolutional autoencoder-based deep learning for intracerebral hemorrhage classification using brain CT images.

Nageswara Rao B, Acharya UR, Tan RS, Dash P, Mohapatra M, Sabut S

pubmed logopapersDec 1 2025
Intracerebral haemorrhage (ICH) is a common form of stroke that affects millions of people worldwide. The incidence is associated with a high rate of mortality and morbidity. Accurate diagnosis using brain non-contrast computed tomography (NCCT) is crucial for decision-making on potentially life-saving surgery. Limited access to expert readers and inter-observer variability imposes barriers to timeous and accurate ICH diagnosis. We proposed a hybrid deep learning model for automated ICH diagnosis using NCCT images, which comprises a convolutional autoencoder (CAE) to extract features with reduced data dimensionality and a dense neural network (DNN) for classification. In order to ensure that the model generalizes to new data, we trained it using tenfold cross-validation and holdout methods. Principal component analysis (PCA) based dimensionality reduction and classification is systematically implemented for comparison. The study dataset comprises 1645 ("ICH" class) and 1648 ("Normal" class belongs to patients with non-hemorrhagic stroke) labelled images obtained from 108 patients, who had undergone CT examination on a 64-slice computed tomography scanner at Kalinga Institute of Medical Sciences between 2020 and 2023. Our developed CAE-DNN hybrid model attained 99.84% accuracy, 99.69% sensitivity, 100% specificity, 100% precision, and 99.84% F1-score, which outperformed the comparator PCA-DNN model as well as the published results in the literature. In addition, using saliency maps, our CAE-DNN model can highlight areas on the images that are closely correlated with regions of ICH, which have been manually contoured by expert readers. The CAE-DNN model demonstrates the proof-of-concept for accurate ICH detection and localization, which can potentially be implemented to prioritize the treatment using NCCT images in clinical settings.

The performance of artificial intelligence in image-based prediction of hematoma enlargement: a systematic review and meta-analysis.

Fan W, Wu Z, Zhao W, Jia L, Li S, Wei W, Chen X

pubmed logopapersDec 1 2025
Accurately predicting hematoma enlargement (HE) is crucial for improving the prognosis of patients with cerebral haemorrhage. Artificial intelligence (AI) is a potentially reliable assistant for medical image recognition. This study systematically reviews medical imaging articles on the predictive performance of AI in HE. Retrieved relevant studies published before October, 2024 from Embase, Institute of Electrical and Electronics Engineers (IEEE), PubMed, Web of Science, and Cochrane Library databases. The diagnostic test of predicting hematoma enlargement based on CT image training artificial intelligence model, and reported 2 × 2 contingency tables or provided sensitivity (SE) and specificity (SP) for calculation. Two reviewers independently screened the retrieved citations and extracted data. The methodological quality of studies was assessed using the QUADAS-AI, and Preferred Reporting Items for Systematic reviews and Meta-Analyses was used to ensure standardised reporting of studies. Subgroup analysis was performed based on sample size, risk of bias, year of publication, ratio of training set to test set, and number of centres involved. 36 articles were included in this Systematic review to qualitative analysis, of which 23 have sufficient information for further quantitative analysis. Among these articles, there are a total of 7 articles used deep learning (DL) and 16 articles used machine learning (ML). The comprehensive SE and SP of ML are 78% (95% CI: 69-85%) and 85% (78-90%), respectively, while the AUC is 0.89 (0.86-0.91). The SE and SP of DL was 87% (95% CI: 80-92%) and 75% (67-81%), respectively, with an AUC of 0.88 (0.85-0.91). The subgroup analysis found that when the ratio of the training set to the test set is 7:3, the sensitivity is 0.77(0.62-0.91), <i>p</i> = 0.03; In terms of specificity, the group with sample size more than 200 has higher specificity, which is 0.83 (0.75-0.92), <i>p</i> = 0.02; among the risk groups in the study design, the specificity of the risk group was higher, which was 0.83 (0.76-0.89), <i>p</i> = 0.02. The group specificity of articles published before 2021 was higher, 0.84 (0.77-0.90); and the specificity of data from a single research centre was higher, which was 0.85 (0.80-0.91), <i>p</i> < 0.001. Artificial intelligence algorithms based on imaging have shown good performance in predicting HE.

Nonsuicidal self-injury prediction with pain-processing neural circuits using interpretable graph neural network.

Wu S, Xue Y, Hang Y, Xie Y, Zhang P, Liang M, Zhong Y, Wang C

pubmed logopapersDec 1 2025
Nonsuicidal self-injury (NSSI) involves the intentional destruction of one's own body tissues without suicidal intent. Prior research has shown that individuals with NSSI exhibit abnormal pain perception; however, the pain-processing neural circuits underlying NSSI remain poorly understood. This study leverages graph neural networks to predict NSSI risk and examine the learned connectivity of neural underpinnings using multimodal data. Resting-state functional MRI and diffusion tensor imaging were collected from 50 patients with NSSI, 79 healthy controls (HC), and 44 patients with mental disorder who did not engage in NSSI as disease controls (DC). We constructed pain-related brain networks for each participant. An interpretable graph attention networks (GAT) model was developed, considering demographic factors, to predict NSSI risk and highlight NSSI-specific connectivity using learned attention matrices. The proposed GAT model based on imaging data achieved an accuracy of 80%, and increased to 88% when self-reported pain scales were incorporated alongside imaging data in distinguishing patients with NSSI from HC. It highlighted amygdala-parahippocampus and inferior frontal gyrus (IFG)-insula connectivity as pivotal in NSSI-related pain processing. After incorporating imaging data of DC, the model's accuracy reached 74%, underscoring consistent neural connectivity patterns. The GAT model demonstrates high predictive accuracy for NSSI, enhanced by including self-reported pain scales. Our proposed GAT model underscores the significance in the functional integration of limbic regions, paralimbic regions and IFG in NSSI pain processing. Our findings suggest altered pain processing as a key mechanism in NSSI, providing insights for potential neural modulation intervention strategies.

Role of Brain Age Gap as a Mediator in the Relationship Between Cognitive Impairment Risk Factors and Cognition.

Tan WY, Huang X, Huang J, Robert C, Cui J, Chen CPLH, Hilal S

pubmed logopapersJul 22 2025
Cerebrovascular disease (CeVD) and cognitive impairment risk factors contribute to cognitive decline, but the role of brain age gap (BAG) in mediating this relationship remains unclear, especially in Southeast Asian populations. This study investigated the influence of cognitive impairment risk factors on cognition and examined how BAG mediates this relationship, particularly in individuals with varying CeVD burden. This cross-sectional study analyzed Singaporean community and memory clinic participants. Cognitive impairment risk factors were assessed using the Cognitive Impairment Scoring System (CISS), encompassing 11 sociodemographic and vascular factors. Cognition was assessed through a neuropsychological battery, evaluating global cognition and 6 cognitive domains: executive function, attention, memory, language, visuomotor speed, and visuoconstruction. Brain age was derived from structural MRI features using ensemble machine learning model. Propensity score matching balanced risk profiles between model training and the remaining sample. Structural equation modeling examined the mediation effect of BAG on CISS-cognition relationship, stratified by CeVD burden (high: CeVD+, low: CeVD-). The study included 1,437 individuals without dementia, with 646 in the matched sample (mean age 66.4 ± 6.0 years, 47% female, 60% with no cognitive impairment). Higher CISS was consistently associated with poorer cognitive performance across all domains, with the strongest negative associations in visuomotor speed (β = -2.70, <i>p</i> < 0.001) and visuoconstruction (β = -3.02, <i>p</i> < 0.001). Among the CeVD+ group, BAG significantly mediated the relationship between CISS and global cognition (proportion mediated: 19.95%, <i>p</i> = 0.01), with the strongest mediation effects in executive function (34.1%, <i>p</i> = 0.03) and language (26.6%, <i>p</i> = 0.008). BAG also mediated the relationship between CISS and memory (21.1%) and visuoconstruction (14.4%) in the CeVD+ group, but these effects diminished after statistical adjustments. Our findings suggest that BAG is a key intermediary linking cognitive impairment risk factors to cognitive function, particularly in individuals with high CeVD burden. This mediation effect is domain-specific, with executive function, language, and visuoconstruction being the most vulnerable to accelerated brain aging. Limitations of this study include the cross-sectional design, limiting causal inference, and the focus on Southeast Asian populations, limiting generalizability. Future longitudinal studies should verify these relationships and explore additional factors not captured in our model.

Establishment and evaluation of an automatic multi?sequence MRI segmentation model of primary central nervous system lymphoma based on the nnU?Net deep learning network method.

Wang T, Tang X, Du J, Jia Y, Mou W, Lu G

pubmed logopapersJul 1 2025
Accurate quantitative assessment using gadolinium-contrast magnetic resonance imaging (MRI) is crucial in therapy planning, surveillance and prognostic assessment of primary central nervous system lymphoma (PCNSL). The present study aimed to develop a multimodal artificial intelligence deep learning segmentation model to address the challenges associated with traditional 2D measurements and manual volume assessments in MRI. Data from 49 pathologically-confirmed patients with PCNSL from six Chinese medical centers were analyzed, and regions of interest were manually segmented on contrast-enhanced T1-weighted and T2-weighted MRI scans for each patient, followed by fully automated voxel-wise segmentation of tumor components using a 3-dimenstional convolutional deep neural network. Furthermore, the efficiency of the model was evaluated using practical indicators and its consistency and accuracy was compared with traditional methods. The performance of the models were assessed using the Dice similarity coefficient (DSC). The Mann-Whitney U test was used to compare continuous clinical variables and the χ<sup>2</sup> test was used for comparisons between categorical clinical variables. T1WI sequences exhibited the optimal performance (training dice: 0.923, testing dice: 0.830, outer validation dice: 0.801), while T2WI showed a relatively poor performance (training dice of 0.761, a testing dice of 0.647, and an outer validation dice of 0.643. In conclusion, the automatic multi-sequences MRI segmentation model for PCNSL in the present study displayed high spatial overlap ratio and similar tumor volume with routine manual segmentation, indicating its significant potential.

Physiological Confounds in BOLD-fMRI and Their Correction.

Addeh A, Williams RJ, Golestani A, Pike GB, MacDonald ME

pubmed logopapersJul 1 2025
Functional magnetic resonance imaging (fMRI) has opened new frontiers in neuroscience by instrumentally driving our understanding of brain function and development. Despite its substantial successes, fMRI studies persistently encounter obstacles stemming from inherent, unavoidable physiological confounds. The adverse effects of these confounds are especially noticeable with higher magnetic fields, which have been gaining momentum in fMRI experiments. This review focuses on the four major physiological confounds impacting fMRI studies: low-frequency fluctuations in both breathing depth and rate, low-frequency fluctuations in the heart rate, thoracic movements, and cardiac pulsatility. Over the past three decades, numerous correction techniques have emerged to address these challenges. Correction methods have effectively enhanced the detection of task-activated voxels and minimized the occurrence of false positives and false negatives in functional connectivity studies. While confound correction methods have merit, they also have certain limitations. For instance, model-based approaches require externally recorded physiological data that is often unavailable in fMRI studies. Methods reliant on independent component analysis, on the other hand, need prior knowledge about the number of components. Machine learning techniques, although showing potential, are still in the early stages of development and require additional validation. This article reviews the mechanics of physiological confound correction methods, scrutinizes their performance and limitations, and discusses their impact on fMRI studies.

Volumetric and Diffusion Tensor Imaging Abnormalities Are Associated With Behavioral Changes Post-Concussion in a Youth Pig Model of Mild Traumatic Brain Injury.

Sanjida I, Alesa N, Chenyang L, Jiangyang Z, Bianca DM, Ana V, Shaun S, Avner M, Kirk M, Aimee C, Jie H, Ricardo MA, Jane M, Galit P

pubmed logopapersJul 1 2025
Mild traumatic brain injury (mTBI) caused by sports-related incidents in children and youth often leads to prolonged cognitive impairments but remains difficult to diagnose. In order to identify clinically relevant imaging and behavioral biomarkers associated concussion, a closed-head mTBI was induced in adolescent pigs. Twelve (n = 4 male and n = 8 female), 16-week old Yucatan pigs were tested; n = 6 received mTBI and n = 6 received a sham procedure. T1-weighted imaging was used to assess volumetric alterations in different regions of the brain and diffusion tensor imaging (DTI) to examine microstructural damage in white matter. The pigs were imaged at 1- and 3-month post-injury. Neuropsychological screening for executive function and anxiety were performed before and in the months after the injury. The volumetric analysis showed significant longitudinal changes in pigs with mTBI compared with sham, which may be attributed to swelling and neuroinflammation. Fractional anisotropy (FA) values derived from DTI images demonstrated a 21% increase in corpus callosum from 1 to 3 months in mTBI pigs, which is significantly higher than in sham pigs (4.8%). Additionally, comparisons of the left and right internal capsules revealed a decrease in FA in the right internal capsule for mTBI pigs, which may indicate demyelination. The neuroimaging results suggest that the injury had disrupted the maturation of white and gray matter in the developing brain. Behavioral testing showed that compare to sham pigs, mTBI pigs exhibited 23% increased activity in open field tests, 35% incraesed escape attempts, along with a 65% decrease in interaction with the novel object, suggesting possible memory impairments and cognitive deficits. The correlation analysis showed an associations between volumetric features and behavioral metrics. Furthermore, a machine learning model, which integrated FA, volumetric features and behavioral test metrics, achieved 67% accuracy, indicating its potential to differentiate the two groups. Thus, the imaging biomarkers were indicative of long-term behavioral impairments and could be crucial to the clinical management of concussion in youth.

Machine learning in neuroimaging and computational pathophysiology of Parkinson's disease: A comprehensive review and meta-analysis.

Sharma K, Shanbhog M, Singh K

pubmed logopapersJul 1 2025
In recent years, machine learning and deep learning have shown potential for improving Parkinson's disease (PD) diagnosis, one of the most common neurodegenerative diseases. This comprehensive analysis examines machine learning and deep learning-based Parkinson's disease diagnosis using MRI, speech, and handwriting datasets. To thoroughly analyze PD, this study collected data from scientific literature, experimental investigations, publicly accessible datasets, and global health reports. This study examines the worldwide historical setting of Parkinson's disease, focusing on its increasing prevalence and inequities in treatment access across various regions. A comprehensive summary consolidates essential findings from clinical investigations and pertinent datasets related to Parkinson's disease management. The worldwide context, prospective treatments, therapies, and drugs for Parkinson's disease have been thoroughly examined. This analysis identifies significant research deficiencies and suggests future methods, emphasizing the necessity for more extensive and diverse datasets and improved model accessibility. The current study proposes the Meta-Park model for diagnosing Parkinson's disease, achieving training, testing, and validation accuracy of 97.67 %, 95 %, and 94.04 %. This method provides a dependable and scalable way to improve clinical decision-making in managing Parkinson's disease. This research seeks to provide innovative, data-driven decisions for early diagnosis and effective treatment by merging the proposed method with a thorough examination of existing interventions, providing renewed hope to patients and the medical community.

Association of Psychological Resilience With Decelerated Brain Aging in Cognitively Healthy World Trade Center Responders.

Seeley SH, Fremont R, Schreiber Z, Morris LS, Cahn L, Murrough JW, Schiller D, Charney DS, Pietrzak RH, Perez-Rodriguez MM, Feder A

pubmed logopapersJul 1 2025
Despite their exposure to potentially traumatic stressors, the majority of World Trade Center (WTC) responders-those who worked on rescue, recovery, and cleanup efforts on or following September 11, 2001-have shown psychological resilience, never developing long-term psychopathology. Psychological resilience may be protective against the earlier age-related cognitive changes associated with posttraumatic stress disorder (PTSD) in this cohort. In the current study, we calculated the difference between estimated brain age from structural magnetic resonance imaging (MRI) data and chronological age in WTC responders who participated in a parent functional MRI study of resilience (<i>N</i> = 97). We hypothesized that highly resilient responders would show the least brain aging and explored associations between brain aging and psychological and cognitive measures. WTC responders screened for the absence of cognitive impairment were classified into 3 groups: a WTC-related PTSD group (<i>n</i> = 32), a Highly Resilient group without lifetime psychopathology despite high WTC-related exposure (<i>n</i> = 34), and a Lower WTC-Exposed control group also without lifetime psychopathology (<i>n</i> = 31). We used <i>BrainStructureAges</i>, a deep learning algorithm that estimates voxelwise age from T1-weighted MRI data to calculate decelerated (or accelerated) brain aging relative to chronological age. Globally, brain aging was decelerated in the Highly Resilient group and accelerated in the PTSD group, with a significant group difference (<i>p</i> = .021, Cohen's <i>d</i> = 0.58); the Lower WTC-Exposed control group exhibited no significant brain age gap or group difference. Lesser brain aging was associated with resilience-linked factors including lower emotional suppression, greater optimism, and better verbal learning. Cognitively healthy WTC responders show differences in brain aging related to resilience and PTSD.
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