Epicardial and paracardial adipose tissue quantification in short-axis cardiac cine MRI using deep learning.
Authors
Affiliations (5)
Affiliations (5)
- School of Biomedical Engineering & State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, 393 M. Huaxia Rd., Pudong New District, Shanghai, 201210, China.
- Department of Cardiology, Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine, 160 Pu Jian Rd., Pudong New District, Shanghai, 200127, China.
- School of Biomedical Engineering & State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University, 393 M. Huaxia Rd., Pudong New District, Shanghai, 201210, China. [email protected].
- Department of Cardiology, Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine, 160 Pu Jian Rd., Pudong New District, Shanghai, 200127, China. [email protected].
- Shanghai Clinical Research and Trial Center, Shanghai, China.
Abstract
Epicardial and paracardial adipose tissues (EAT and PAT) are two types of fat depots around the heart and they have important roles in cardiac physiology. Manual quantification of EAT and PAT from cardiac MR (CMR) is time-consuming and prone to human bias. Leveraging the cardiac motion, we aimed to develop deep learning neural networks for automated segmentation and quantification of EAT and PAT in short-axis cine CMR. A modified U-Net equipped with modules of multi-resolution convolution, motion information extraction, feature fusion, and dual attention mechanisms, was developed. Multiple steps of ablation studies were performed to verify the efficacy of each module. The performance of different networks was also compared. The final network incorporating all modules achieved segmentation Dice indices of 77.72% ± 2.53% and 77.18% ± 3.54% for EAT and PAT, respectively, which were significantly higher than the baseline U-Net. It also achieved the highest performance compared to other networks. With our model, the determination coefficients of EAT and PAT volumes to the reference were 0.8550 and 0.8025, respectively. Our proposed network can provide accurate and quick quantification of EAT and PAT on routine short-axis cine CMR, which can potentially aid cardiologists in clinical settings.