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Machine learning decision support model construction for craniotomy approach of pineal region tumors based on MRI images.

Chen Z, Chen Y, Su Y, Jiang N, Wanggou S, Li X

pubmed logopapersMay 27 2025
Pineal region tumors (PRTs) are rare but deep-seated brain tumors, and complete surgical resection is crucial for effective tumor treatment. The choice of surgical approach is often challenging due to the low incidence and deep location. This study aims to combine machine learning and deep learning algorithms with pre-operative MRI images to build a model for PRTs surgical approaches recommendation, striving to model clinical experience for practical reference and education. This study was a retrospective study which enrolled a total of 173 patients diagnosed with PRTs radiologically from our hospital. Three traditional surgical approaches of were recorded for prediction label. Clinical and VASARI related radiological information were selected for machine learning prediction model construction. And MRI images from axial, sagittal and coronal views of orientation were also used for deep learning craniotomy approach prediction model establishment and evaluation. 5 machine learning methods were applied to construct the predictive classifiers with the clinical and VASARI features and all methods could achieve area under the ROC (Receiver operating characteristic) curve (AUC) values over than 0.7. And also, 3 deep learning algorithms (ResNet-50, EfficientNetV2-m and ViT) were applied based on MRI images from different orientations. EfficientNetV2-m achieved the highest AUC value of 0.89, demonstrating a significant high performance of prediction. And class activation mapping was used to reveal that the tumor itself and its surrounding relations are crucial areas for model decision-making. In our study, we used machine learning and deep learning to construct surgical approach recommendation models. Deep learning could achieve high performance of prediction and provide efficient and personalized decision support tools for PRTs surgical approach. Not applicable.

Deep learning network enhances imaging quality of low-b-value diffusion-weighted imaging and improves lesion detection in prostate cancer.

Liu Z, Gu WJ, Wan FN, Chen ZZ, Kong YY, Liu XH, Ye DW, Dai B

pubmed logopapersMay 27 2025
Diffusion-weighted imaging with higher b-value improves detection rate for prostate cancer lesions. However, obtaining high b-value DWI requires more advanced hardware and software configuration. Here we use a novel deep learning network, NAFNet, to generate a deep learning reconstructed (DLR<sub>1500</sub>) images from 800 b-value to mimic 1500 b-value images, and to evaluate its performance and lesion detection improvements based on whole-slide images (WSI). We enrolled 303 prostate cancer patients with both 800 and 1500 b-values from Fudan University Shanghai Cancer Centre between 2017 and 2020. We assigned these patients to the training and validation set in a 2:1 ratio. The testing set included 36 prostate cancer patients from an independent institute who had only preoperative DWI at 800 b-value. Two senior radiology doctors and two junior radiology doctors read and delineated cancer lesions on DLR<sub>1500</sub>, original 800 and 1500 b-values DWI images. WSI were used as the ground truth to assess the lesion detection improvement of DLR<sub>1500</sub> images in the testing set. After training and generating, within junior radiology doctors, the diagnostic AUC based on DLR<sub>1500</sub> images is not inferior to that based on 1500 b-value images (0.832 (0.788-0.876) vs. 0.821 (0.747-0.899), P = 0.824). The same phenomenon is also observed in senior radiology doctors. Furthermore, in the testing set, DLR<sub>1500</sub> images could significantly enhance junior radiology doctors' diagnostic performance than 800 b-value images (0.848 (0.758-0.938) vs. 0.752 (0.661-0.843), P = 0.043). DLR<sub>1500</sub> DWIs were comparable in quality to original 1500 b-value images within both junior and senior radiology doctors. NAFNet based DWI enhancement can significantly improve the image quality of 800 b-value DWI, and therefore promote the accuracy of prostate cancer lesion detection for junior radiology doctors.

Automated Body Composition Analysis Using DAFS Express on 2D MRI Slices at L3 Vertebral Level.

Akella V, Bagherinasab R, Lee H, Li JM, Nguyen L, Salehin M, Chow VTY, Popuri K, Beg MF

pubmed logopapersMay 27 2025
Body composition analysis is vital in assessing health conditions such as obesity, sarcopenia, and metabolic syndromes. MRI provides detailed images of skeletal muscle (SM), visceral adipose tissue (VAT), and subcutaneous adipose tissue (SAT), but their manual segmentation is labor-intensive and limits clinical applicability. This study validates an automated tool for MRI-based 2D body composition analysis (Data Analysis Facilitation Suite (DAFS) Express), comparing its automated measurements with expert manual segmentations using UK Biobank data. A cohort of 399 participants from the UK Biobank dataset was selected, yielding 423 single L3 slices for analysis. DAFS Express performed automated segmentations of SM, VAT, and SAT, which were then manually corrected by expert raters for validation. Evaluation metrics included Jaccard coefficients, Dice scores, intraclass correlation coefficients (ICCs), and Bland-Altman Plots to assess segmentation agreement and reliability. High agreements were observed between automated and manual segmentations with mean Jaccard scores: SM 99.03%, VAT 95.25%, and SAT 99.57%, and mean Dice scores: SM 99.51%, VAT 97.41%, and SAT 99.78%. Cross-sectional area comparisons showed consistent measurements, with automated methods closely matching manual measurements for SM and SAT, and slightly higher values for VAT (SM: auto 132.51 cm<sup>2</sup>, manual 132.36 cm<sup>2</sup>; VAT: auto 137.07 cm<sup>2</sup>, manual 134.46 cm<sup>2</sup>; SAT: auto 203.39 cm<sup>2</sup>, manual 202.85 cm<sup>2</sup>). ICCs confirmed strong reliability (SM 0.998, VAT 0.994, SAT 0.994). Bland-Altman plots revealed minimal biases, and boxplots illustrated distribution similarities across SM, VAT, and SAT areas. On average, DAFS Express took 18 s per DICOM for a total of 126.9 min for 423 images to output segmentations and measurement PDF's per DICOM. Automated segmentation of SM, VAT, and SAT from 2D MRI images using DAFS Express showed comparable accuracy to manual segmentation. This underscores its potential to streamline image analysis processes in research and clinical settings, enhancing diagnostic accuracy and efficiency. Future work should focus on further validation across diverse clinical applications and imaging conditions.

Development of a No-Reference CT Image Quality Assessment Method Using RadImageNet Pre-trained Deep Learning Models.

Ohashi K, Nagatani Y, Yamazaki A, Yoshigoe M, Iwai K, Uemura R, Shimomura M, Tanimura K, Ishida T

pubmed logopapersMay 27 2025
Accurate assessment of computed tomography (CT) image quality is crucial for ensuring diagnostic accuracy, optimizing imaging protocols, and preventing excessive radiation exposure. In clinical settings, where high-quality reference images are often unavailable, developing no-reference image quality assessment (NR-IQA) methods is essential. Recently, CT-NR-IQA methods using deep learning have been widely studied; however, significant challenges remain in handling multiple degradation factors and accurately reflecting real-world degradations. To address these issues, we propose a novel CT-NR-IQA method. Our approach utilizes a dataset that combines two degradation factors (noise and blur) to train convolutional neural network (CNN) models capable of handling multiple degradation factors. Additionally, we leveraged RadImageNet pre-trained models (ResNet50, DenseNet121, InceptionV3, and InceptionResNetV2), allowing the models to learn deep features from large-scale real clinical images, thus enhancing adaptability to real-world degradations without relying on artificially degraded images. The models' performances were evaluated by measuring the correlation between the subjective scores and predicted image quality scores for both artificially degraded and real clinical image datasets. The results demonstrated positive correlations between the subjective and predicted scores for both datasets. In particular, ResNet50 showed the best performance, with a correlation coefficient of 0.910 for the artificially degraded images and 0.831 for the real clinical images. These findings indicate that the proposed method could serve as a potential surrogate for subjective assessment in CT-NR-IQA.

Deep Learning Auto-segmentation of Diffuse Midline Glioma on Multimodal Magnetic Resonance Images.

Fernández-Patón M, Montoya-Filardi A, Galiana-Bordera A, Martínez-Gironés PM, Veiga-Canuto D, Martínez de Las Heras B, Cerdá-Alberich L, Martí-Bonmatí L

pubmed logopapersMay 27 2025
Diffuse midline glioma (DMG) H3 K27M-altered is a rare pediatric brainstem cancer with poor prognosis. To advance the development of predictive models to gain a deeper understanding of DMG, there is a crucial need for seamlessly integrating automatic and highly accurate tumor segmentation techniques. There is only one method that tries to solve this task in this cancer; for that reason, this study develops a modified CNN-based 3D-Unet tool to automatically segment DMG in an accurate way in magnetic resonance (MR) images. The dataset consisted of 52 DMG patients and 70 images, each with T1W and T2W or FLAIR images. Three different datasets were created: T1W images, T2W or FLAIR images, and a combined set of T1W and T2W/FLAIR images. Denoising, bias field correction, spatial resampling, and normalization were applied as preprocessing steps to the MR images. Patching techniques were also used to enlarge the dataset size. For tumor segmentation, a 3D U-Net architecture with residual blocks was used. The best results were obtained for the dataset composed of all T1W and T2W/FLAIR images, reaching an average Dice Similarity Coefficient (DSC) of 0.883 on the test dataset. These results are comparable to other brain tumor segmentation models and to state-of-the-art results in DMG segmentation using fewer sequences. Our results demonstrate the effectiveness of the proposed 3D U-Net architecture for DMG tumor segmentation. This advancement holds potential for enhancing the precision of diagnostic and predictive models in the context of this challenging pediatric cancer.

PlaNet-S: an Automatic Semantic Segmentation Model for Placenta Using U-Net and SegNeXt.

Saito I, Yamamoto S, Takaya E, Harigai A, Sato T, Kobayashi T, Takase K, Ueda T

pubmed logopapersMay 27 2025
This study aimed to develop a fully automated semantic placenta segmentation model that integrates the U-Net and SegNeXt architectures through ensemble learning. A total of 218 pregnant women with suspected placental abnormalities who underwent magnetic resonance imaging (MRI) were enrolled, yielding 1090 annotated images for developing a deep learning model for placental segmentation. The images were standardized and divided into training and test sets. The performance of Placental Segmentation Network (PlaNet-S), which integrates U-Net and SegNeXt within an ensemble framework, was assessed using Intersection over Union (IoU) and counting connected components (CCC) against the U-Net, U-Net + + , and DS-transUNet. PlaNet-S had significantly higher IoU (0.78, SD = 0.10) than that of U-Net (0.73, SD = 0.13) (p < 0.005) and DS-transUNet (0.64, SD = 0.16) (p < 0.005), while the difference with U-Net + + (0.77, SD = 0.12) was not statistically significant. The CCC for PlaNet-S was significantly higher than that for U-Net (p < 0.005), U-Net + + (p < 0.005), and DS-transUNet (p < 0.005), matching the ground truth in 86.0%, 56.7%, 67.9%, and 20.9% of the cases, respectively. PlaNet-S achieved higher IoU than U-Net and DS-transUNet, and comparable IoU to U-Net + + . Moreover, PlaNet-S significantly outperformed all three models in CCC, indicating better agreement with the ground truth. This model addresses the challenges of time-consuming physician-assisted manual segmentation and offers the potential for diverse applications in placental imaging analyses.

Deep learning-based CAD system for Alzheimer's diagnosis using deep downsized KPLS.

Neffati S, Mekki K, Machhout M

pubmed logopapersMay 27 2025
Alzheimer's disease (AD) is the most prevalent type of dementia. It is linked with a gradual decline in various brain functions, such as memory. Many research efforts are now directed toward non-invasive procedures for early diagnosis because early detection greatly benefits the patient care and treatment outcome. Additional to an accurate diagnosis and reduction of the rate of misdiagnosis; Computer-Aided Design (CAD) systems are built to give definitive diagnosis. This paper presents a novel CAD system to determine stages of AD. Initially, deep learning techniques are utilized to extract features from the AD brain MRIs. Then, the extracted features are reduced using a proposed feature reduction technique named Deep Downsized Kernel Partial Least Squares (DDKPLS). The proposed approach selects a reduced number of samples from the initial information matrix. The samples chosen give rise to a new data matrix further processed by KPLS to deal with the high dimensionality. The reduced feature space is finally classified using ELM. The implementation is named DDKPLS-ELM. Reference tests have been performed on the Kaggle MRI dataset, which exhibit the efficacy of the DDKPLS-based classifier; it achieves accuracy up to 95.4% and an F1 score of 95.1%.

Machine learning-driven imaging data for early prediction of lung toxicity in breast cancer radiotherapy.

Ungvári T, Szabó D, Győrfi A, Dankovics Z, Kiss B, Olajos J, Tőkési K

pubmed logopapersMay 27 2025
One possible adverse effect of breast irradiation is the development of pulmonary fibrosis. The aim of this study was to determine whether planning CT scans can predict which patients are more likely to develop lung lesions after treatment. A retrospective analysis of 242 patient records was performed using different machine learning models. These models showed a remarkable correlation between the occurrence of fibrosis and the hounsfield units of lungs in CT data. Three different classification methods (Tree, Kernel-based, k-Nearest Neighbors) showed predictive values above 60%. The human predictive factor (HPF), a mathematical predictive model, further strengthened the association between lung hounsfield unit (HU) metrics and radiation-induced lung injury (RILI). These approaches optimize radiation treatment plans to preserve lung health. Machine learning models and HPF can also provide effective diagnostic and therapeutic support for other diseases.

China Protocol for early screening, precise diagnosis, and individualized treatment of lung cancer.

Wang C, Chen B, Liang S, Shao J, Li J, Yang L, Ren P, Wang Z, Luo W, Zhang L, Liu D, Li W

pubmed logopapersMay 27 2025
Early screening, diagnosis, and treatment of lung cancer are pivotal in clinical practice since the tumor stage remains the most dominant factor that affects patient survival. Previous initiatives have tried to develop new tools for decision-making of lung cancer. In this study, we proposed the China Protocol, a complete workflow of lung cancer tailored to the Chinese population, which is implemented by steps including early screening by evaluation of risk factors and three-dimensional thin-layer image reconstruction technique for low-dose computed tomography (Tre-LDCT), accurate diagnosis via artificial intelligence (AI) and novel biomarkers, and individualized treatment through non-invasive molecule visualization strategies. The application of this protocol has improved the early diagnosis and 5-year survival rates of lung cancer in China. The proportion of early-stage (stage I) lung cancer has increased from 46.3% to 65.6%, along with a 5-year survival rate of 90.4%. Moreover, especially for stage IA1 lung cancer, the diagnosis rate has improved from 16% to 27.9%; meanwhile, the 5-year survival rate of this group achieved 97.5%. Thus, here we defined stage IA1 lung cancer, which cohort benefits significantly from early diagnosis and treatment, as the "ultra-early stage lung cancer", aiming to provide an intuitive description for more precise management and survival improvement. In the future, we will promote our findings to multicenter remote areas through medical alliances and mobile health services with the desire to move forward the diagnosis and treatment of lung cancer.

Dose calculation in nuclear medicine with magnetic resonance imaging images using Monte Carlo method.

Vu LH, Thao NTP, Trung NT, Hau PVT, Hong Loan TT

pubmed logopapersMay 27 2025
In recent years, scientists have been trying to convert magnetic resonance imaging (MRI) images into computed tomography (CT) images for dose calculations while taking advantage of the benefits of MRI images. The main approaches for image conversion are bulk density, Atlas registration, and machine learning. These methods have limitations in accuracy and time consumption and require large datasets to convert images. In this study, the novel 'voxels spawn voxels' technique combined with the 'orthonormalize' feature in Carimas software was developed to build a conversion dataset from MRI intensity to Hounsfield unit value for some structural regions including gluteus maximus, liver, kidneys, spleen, pancreas, and colon. The original CT images and the converted MRI images were imported into the Geant4/Gamos software for dose calculation. It gives good results (<5%) in most organs except the intestine (18%).
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