It is challenging to preoperatively diagnose follicular thyroid carcinoma (FTC) on ultrasound images. This study aimed to develop an end-to-end diagnostic model that can classify thyroid tumors into benign tumors, FTC and other malignant tumors based on deep learning. This retrospective multi-center study included 10,771 consecutive adult patients who underwent conventional ultrasound and postoperative pathology between January 2018 and September 2021. We proposed a novel data augmentation method and a mixed loss function to solve an imbalanced dataset and applied them to a pre-trained convolutional neural network and transformer model that could effectively extract image features. The proposed model can directly identify FTC from other malignant subtypes and benign tumors based on ultrasound images. The testing dataset included 1078 patients (mean age, 47.3 years ± 11.8 (SD); 811 female patients; FTCs, 39 of 1078 (3.6%); Other malignancies, 385 of 1078 (35.7%)). The proposed classification model outperformed state-of-the-art models on differentiation of FTC from other malignant sub-types and benign ones, achieved an excellent diagnosis performance with balanced-accuracy 0.87, AUC 0.96 (95% CI: 0.96, 0.96), mean sensitivity 0.87 and mean specificity 0.92. Meanwhile, it was superior to radiologists included in this study for thyroid tumor diagnosis (balanced-accuracy: Junior 0.60, p < 0.001; Mid-level 0.59, p < 0.001; Senior 0.66, p < 0.001). The developed classification model addressed the class-imbalanced problem and achieved higher performance in differentiating FTC from other malignant subtypes and benign tumors compared with existing methods. Question Deep learning has the potential to improve preoperatively diagnostic accuracy for follicular thyroid carcinoma (FTC). Findings The proposed model achieved high accuracy, sensitivity and specificity in diagnosing follicular thyroid carcinoma, outperforming other models. Clinical relevance The proposed model is a promising computer-aided diagnostic tool for the clinical diagnosis of FTC, which potentially could help reduce missed diagnosis and misdiagnosis for FTC.

Ultrasound technology enables safe, non-invasive imaging of dynamic tissue behavior, making it a valuable tool in medicine, biomechanics, and sports science. However, accurately tracking tissue motion in B-mode ultrasound remains challenging due to speckle noise, low edge contrast, and out-of-plane movement. These challenges complicate the task of tracking anatomical landmarks over time, which is essential for quantifying tissue dynamics in many clinical and research applications. This manuscript introduces DUSTrack (Deep learning and optical flow-based toolkit for UltraSound Tracking), a semi-automated framework for tracking arbitrary points in B-mode ultrasound videos. We combine deep learning with optical flow to deliver high-quality and robust tracking across diverse anatomical structures and motion patterns. The toolkit includes a graphical user interface that streamlines the generation of high-quality training data and supports iterative model refinement. It also implements a novel optical-flow-based filtering technique that reduces high-frequency frame-to-frame noise while preserving rapid tissue motion. DUSTrack demonstrates superior accuracy compared to contemporary zero-shot point trackers and performs on par with specialized methods, establishing its potential as a general and foundational tool for clinical and biomechanical research. We demonstrate DUSTrack's versatility through three use cases: cardiac wall motion tracking in echocardiograms, muscle deformation analysis during reaching tasks, and fascicle tracking during ankle plantarflexion. As an open-source solution, DUSTrack offers a powerful, flexible framework for point tracking to quantify tissue motion from ultrasound videos. DUSTrack is available at https://github.com/praneethnamburi/DUSTrack.

Accurate classification of computed tomography (CT) images is essential for diagnosis and treatment planning, but existing methods often struggle with the subtle and spatially diverse nature of pathological features. Current approaches typically process images uniformly, limiting their ability to detect localized abnormalities that require focused analysis. We introduce UGPL, an uncertainty-guided progressive learning framework that performs a global-to-local analysis by first identifying regions of diagnostic ambiguity and then conducting detailed examination of these critical areas. Our approach employs evidential deep learning to quantify predictive uncertainty, guiding the extraction of informative patches through a non-maximum suppression mechanism that maintains spatial diversity. This progressive refinement strategy, combined with an adaptive fusion mechanism, enables UGPL to integrate both contextual information and fine-grained details. Experiments across three CT datasets demonstrate that UGPL consistently outperforms state-of-the-art methods, achieving improvements of 3.29%, 2.46%, and 8.08% in accuracy for kidney abnormality, lung cancer, and COVID-19 detection, respectively. Our analysis shows that the uncertainty-guided component provides substantial benefits, with performance dramatically increasing when the full progressive learning pipeline is implemented. Our code is available at: https://github.com/shravan-18/UGPL

Accurate segmentation of orbital bones in facial computed tomography (CT) images is essential for the creation of customized implants for reconstruction of defected orbital bones, particularly challenging due to the ambiguous boundaries and thin structures such as the orbital medial wall and orbital floor. In these ambiguous regions, existing segmentation approaches often output disconnected or under-segmented results. We propose a novel framework that corrects segmentation results by leveraging consensus from multiple diffusion model outputs. Our approach employs a conditional Bernoulli diffusion model trained on diverse annotation patterns per image to generate multiple plausible segmentations, followed by a consensus-driven correction that incorporates position proximity, consensus level, and gradient direction similarity to correct challenging regions. Experimental results demonstrate that our method outperforms existing methods, significantly improving recall in ambiguous regions while preserving the continuity of thin structures. Furthermore, our method automates the manual process of segmentation result correction and can be applied to image-guided surgical planning and surgery.

Recent developments in the registration of histology and micro-computed tomography (µCT) have broadened the perspective of pathological applications such as virtual histology based on µCT. This topic remains challenging because of the low image quality of soft tissue CT. Additionally, soft tissue samples usually deform during the histology slide preparation, making it difficult to correlate the structures between the histology slide and µCT. In this work, we propose a novel 2D-3D multi-modal deformable image registration method. The method utilizes an initial global 2D-3D registration using an ML-based differentiable similarity measure. The registration is then finalized by an analytical out-of-plane deformation refinement. The method is evaluated on datasets acquired from tonsil and tumor tissues. µCTs of both phase-contrast and conventional absorption modalities are investigated. The registration results from the proposed method are compared with those from intensity- and keypoint-based methods. The comparison is conducted using both visual and fiducial-based evaluations. The proposed method demonstrates superior performance compared to the other two methods.

In high energy density physics (HEDP) and inertial confinement fusion (ICF), predictive modeling is complicated by uncertainty in parameters that characterize various aspects of the modeled system, such as those characterizing material properties, equation of state (EOS), opacities, and initial conditions. Typically, however, these parameters are not directly observable. What is observed instead is a time sequence of radiographic projections using X-rays. In this work, we define a set of sparse hydrodynamic features derived from the outgoing shock profile and outer material edge, which can be obtained from radiographic measurements, to directly infer such parameters. Our machine learning (ML)-based methodology involves a pipeline of two architectures, a radiograph-to-features network (R2FNet) and a features-to-parameters network (F2PNet), that are trained independently and later combined to approximate a posterior distribution for the parameters from radiographs. We show that the machine learning architectures are able to accurately infer initial conditions and EOS parameters, and that the estimated parameters can be used in a hydrodynamics code to obtain density fields, shocks, and material interfaces that satisfy thermodynamic and hydrodynamic consistency. Finally, we demonstrate that features resulting from an unknown EOS model can be successfully mapped onto parameters of a chosen analytical EOS model, implying that network predictions are learning physics, with a degree of invariance to the underlying choice of EOS model. To the best of our knowledge, our framework is the first demonstration of recovering both thermodynamic and hydrodynamic consistent density fields from noisy radiographs.

This study aimed to evaluate the diagnostic performance of ChatGPT-4o, a large language model developed by OpenAI, in challenging cases of oral and maxillofacial diseases presented in the <i>Clinicopathologic Conference</i> section of the journal <i>Oral Surgery</i>, <i>Oral Medicine</i>, <i>Oral Pathology</i>, <i>Oral Radiology</i>. A total of 123 diagnostically challenging oral and maxillofacial cases published in the aforementioned journal were retrospectively collected. The case presentations, which included detailed clinical, radiographic, and sometimes histopathologic descriptions, were input into ChatGPT-4o. The model was prompted to provide a single most likely diagnosis for each case. These outputs were then compared to the final diagnoses established by expert consensus in each original case report. The accuracy of ChatGPT-4o was calculated based on exact diagnostic matches. ChatGPT-4o correctly diagnosed 96 out of 123 cases, achieving an overall diagnostic accuracy of 78%. Nevertheless, even in cases where the exact diagnosis was not provided, the model often suggested one of the clinically reasonable differential diagnoses. ChatGPT-4o demonstrates a promising ability to assist in the diagnostic process of complex maxillofacial conditions, with a relatively high accuracy rate in challenging cases. While it is not a replacement for expert clinical judgment, large language models may offer valuable decision support in oral and maxillofacial radiology, particularly in educational or consultative contexts. Not applicable.

Sparse autoencoders (SAEs) emerged as a promising tool for mechanistic interpretability of transformer-based foundation models. Very recently, SAEs were also adopted for the visual domain, enabling the discovery of visual concepts and their patch-wise attribution to tokens in the transformer model. While a growing number of foundation models emerged for medical imaging, tools for explaining their inferences are still lacking. In this work, we show the applicability of SAEs for hematology. We propose CytoSAE, a sparse autoencoder which is trained on over 40,000 peripheral blood single-cell images. CytoSAE generalizes to diverse and out-of-domain datasets, including bone marrow cytology, where it identifies morphologically relevant concepts which we validated with medical experts. Furthermore, we demonstrate scenarios in which CytoSAE can generate patient-specific and disease-specific concepts, enabling the detection of pathognomonic cells and localized cellular abnormalities at the patch level. We quantified the effect of concepts on a patient-level AML subtype classification task and show that CytoSAE concepts reach performance comparable to the state-of-the-art, while offering explainability on the sub-cellular level. Source code and model weights are available at https://github.com/dynamical-inference/cytosae.

Deep learning has significantly advanced the field of medical image classification, particularly with the adoption of Convolutional Neural Networks (CNNs). Various deep learning frameworks such as Keras, PyTorch and JAX offer unique advantages in model development and deployment. However, their comparative performance in medical imaging tasks remains underexplored. This study presents a comprehensive analysis of CNN implementations across these frameworks, using the PathMNIST dataset as a benchmark. We evaluate training efficiency, classification accuracy and inference speed to assess their suitability for real-world applications. Our findings highlight the trade-offs between computational speed and model accuracy, offering valuable insights for researchers and practitioners in medical image analysis.

The panoramic radiograph is the most commonly used imaging modality for predicting maxillary canine impaction. Several prediction models have been constructed based on panoramic radiographs. This study aimed to compare the prediction accuracy of existing models in an external validation facilitated by an automatic landmark detection system based on deep learning. Patients aged 7-14 years who underwent panoramic radiographic examinations and received a diagnosis of impacted canines were included in the study. An automatic landmark localization system was employed to assist the measurement of geometric parameters on the panoramic radiographs, followed by the calculated prediction of the canine impaction. Three prediction models constructed by Arnautska, Alqerban et al, and Margot et al were evaluated. The metrics of accuracy, sensitivity, specificity, precision, and area under the receiver operating characteristic curve (AUC) were used to compare the performance of different models. A total of 102 panoramic radiographs with 102 impacted canines and 102 nonimpacted canines were analyzed in this study. The prediction outcomes indicated that the model by Margot et al achieved the highest performance, with a sensitivity of 95% and a specificity of 86% (AUC, 0.97), followed by the model by Arnautska, with a sensitivity of 93% and a specificity of 71% (AUC, 0.94). The model by Alqerban et al showed poor performance with an AUC of only 0.20. Two of the existing predictive models exhibited good diagnostic accuracy, whereas the third model demonstrated suboptimal performance. Nonetheless, even the most effective model is constrained by several limitations, such as logical and computational challenges, which necessitate further refinement.