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Ultrasound Radio Frequency Time Series for Tissue Typing: Experiments on In-Vivo Breast Samples Using Texture-Optimized Features and Multi-Origin Method of Classification (MOMC).

Arab M, Fallah A, Rashidi S, Dastjerdi MM, Ahmadinejad N

pubmed logopapersJun 30 2025
One of the most promising auxiliaries for screening breast cancer (BC) is ultrasound (US) radio-frequency (RF) time series. It has the superiority of not requiring any supplementary equipment over other methods. This article sought to propound a machine learning (ML) method for the automated categorization of breast lesions-categorized as benign, probably benign, suspicious, or malignant-using features extracted from the accumulated US RF time series. In this research, 220 data points of the categories as mentioned earlier, recorded from 118 patients, were analyzed. The RFTSBU dataset was registered by a SuperSonic Imagine Aixplorer® medical/research system fitted with a linear transducer. The expert radiologist manually selected regions of interest (ROIs) in B-mode images before extracting 283 features from each ROI in the ML approach, utilizing textural features such as Gabor filter (GF), gray-level co-occurrence matrix (GLCM), gray-level run-length matrix (GLRLM), gray-level size zone matrix (GLSZM), and gray-level dependence matrix (GLDM). Subsequently, the particle swarm optimization (PSO) narrowed the features to 131 highly effective ones. Ultimately, the features underwent classification using an innovative multi-origin method classification (MOMC), marking a significant leap in BC diagnosis. Employing 5-fold cross-validation, the study achieved notable accuracy rates of 98.57 ± 1.09%, 91.53 ± 0.89%, and 83.71 ± 1.30% for 2-, 3-, and 4-class classifications, respectively, using MOMC-SVM and MOMC-ensemble classifiers. This research introduces an innovative ML-based approach to differentiate between diverse breast lesion types using in vivo US RF time series data. The findings underscore its efficacy in enhancing classification accuracy, promising significant strides in computer-aided diagnosis (CAD) for BC screening.

Assessment of quantitative staging PET/computed tomography parameters using machine learning for early detection of progression in diffuse large B-cell lymphoma.

Aksu A, Us A, Küçüker KA, Solmaz Ş, Turgut B

pubmed logopapersJun 30 2025
This study aimed to investigate the role of volumetric and dissemination parameters obtained from pretreatment 18-fluorodeoxyglucose PET/computed tomography (18F-FDG PET/CT) in predicting progression/relapse in patients with diffuse large B-cell lymphoma (DLBCL) with machine learning algorithms. Patients diagnosed with DLBCL histopathologically, treated with rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisone, and followed for at least 1 year were reviewed retrospectively. Quantitative parameters such as tumor volume [total metabolic tumor volume (tMTV)], tumor burden [total lesion glycolysis (tTLG)], and the longest distance between two tumor foci (Dmax) were obtained from PET images with a standard uptake value threshold of 4.0. The MTV obtained from the volume of interest with the highest volume was noted as metabolic bulk volume (MBV). By analyzing the patients' PET parameters and clinical information with machine learning algorithms, models that attempt to predict progression/recurrence over 1 year were obtained. Of the 90 patients included, 16 had progression within 1 year. Significant differences were found in tMTV, tTLG, MBV, and Dmax values between patients with and without progression. The area under curve (AUC) of the model obtained with clinical data was 0.701. While a model with an AUC of 0.871 was obtained with a random forest algorithm using PET parameters, the model obtained with the Naive Bayes algorithm including clinical data in PET parameters had an AUC of 0.838. Using quantitative parameters derived from staging PET with machine learning algorithms may enable us to detect early progression in patients with DLBCL and improve early risk stratification and guide treatment decisions in these patients.

A Deep Learning-Based De-Artifact Diffusion Model for Removing Motion Artifacts in Knee MRI.

Li Y, Gong T, Zhou Q, Wang H, Yan X, Xi Y, Shi Z, Deng W, Shi F, Wang Y

pubmed logopapersJun 30 2025
Motion artifacts are common for knee MRI, which usually lead to rescanning. Effective removal of motion artifacts would be clinically useful. To construct an effective deep learning-based model to remove motion artifacts for knee MRI using real-world data. Retrospective. Model construction: 90 consecutive patients (1997 2D slices) who had knee MRI images with motion artifacts paired with immediately rescanned images without artifacts served as ground truth. Internal test dataset: 25 patients (795 slices) from another period; external test dataset: 39 patients (813 slices) from another hospital. 3-T/1.5-T knee MRI with T1-weighted imaging, T2-weighted imaging, and proton-weighted imaging. A deep learning-based supervised conditional diffusion model was constructed. Objective metrics (root mean square error [RMSE], peak signal-to-noise ratio [PSNR], structural similarity [SSIM]) and subjective ratings were used for image quality assessment, which were compared with three other algorithms (enhanced super-resolution [ESR], enhanced deep super-resolution, and ESR using a generative adversarial network). Diagnostic performance of the output images was compared with the rescanned images. The Kappa Test, Pearson chi-square test, Fredman's rank-sum test, and the marginal homogeneity test. A p value < 0.05 was considered statistically significant. Subjective ratings showed significant improvements in the output images compared to the input, with no significant difference from the ground truth. The constructed method demonstrated the smallest RMSE (11.44  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  5.47 in the validation cohort; 13.95  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  4.32 in the external test cohort), the largest PSNR (27.61  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  3.20 in the validation cohort; 25.64  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  2.67 in the external test cohort) and SSIM (0.97  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  0.04 in the validation cohort; 0.94  <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics><mrow><mo>±</mo></mrow> <annotation>$$ \pm $$</annotation></semantics> </math>  0.04 in the external test cohort) compared to the other three algorithms. The output images achieved comparable diagnostic capability as the ground truth for multiple anatomical structures. The constructed model exhibited feasibility and effectiveness, and outperformed multiple other algorithms for removing motion artifacts in knee MRI. Level 3. Stage 2.

Derivation and validation of an artificial intelligence-based plaque burden safety cut-off for long-term acute coronary syndrome from coronary computed tomography angiography.

Bär S, Knuuti J, Saraste A, Klén R, Kero T, Nabeta T, Bax JJ, Danad I, Nurmohamed NS, Jukema RA, Knaapen P, Maaniitty T

pubmed logopapersJun 30 2025
Artificial intelligence (AI) has enabled accurate and fast plaque quantification from coronary computed tomography angiography (CCTA). However, AI detects any coronary plaque in up to 97% of patients. To avoid overdiagnosis, a plaque burden safety cut-off for future coronary events is needed. Percent atheroma volume (PAV) was quantified with AI-guided quantitative computed tomography in a blinded fashion. Safety cut-off derivation was performed in the Turku CCTA registry (Finland), and pre-defined as ≥90% sensitivity for acute coronary syndrome (ACS). External validation was performed in the Amsterdam CCTA registry (the Netherlands). In the derivation cohort, 100/2271 (4.4%) patients experienced ACS (median follow-up 6.9 years). A threshold of PAV ≥ 2.6% was derived with 90.0% sensitivity and negative predictive value (NPV) of 99.0%. In the validation cohort 27/568 (4.8%) experienced ACS (median follow-up 6.7 years) with PAV ≥ 2.6% showing 92.6% sensitivity and 99.0% NPV for ACS. In the derivation cohort, 45.2% of patients had PAV < 2.6 vs. 4.3% with PAV 0% (no plaque) (P < 0.001) (validation cohort: 34.3% PAV < 2.6 vs. 2.6% PAV 0%; P < 0.001). Patients with PAV ≥ 2.6% had higher adjusted ACS rates in the derivation [Hazard ratio (HR) 4.65, 95% confidence interval (CI) 2.33-9.28, P < 0.001] and validation cohort (HR 7.31, 95% CI 1.62-33.08, P = 0.010), respectively. This study suggests that PAV up to 2.6% quantified by AI is associated with low-ACS risk in two independent patient cohorts. This cut-off may be helpful for clinical application of AI-guided CCTA analysis, which detects any plaque in up to 96-97% of patients.

Hybrid strategy of coronary atherosclerosis characterization with T1-weighted MRI and CT angiography to non-invasively predict periprocedural myocardial injury.

Matsumoto H, Higuchi S, Li D, Tanisawa H, Isodono K, Irie D, Ohya H, Kitamura R, Kaneko K, Nakazawa M, Suzuki K, Komori Y, Hondera T, Cadet S, Lee HL, Christodoulou AG, Slomka PJ, Dey D, Xie Y, Shinke T

pubmed logopapersJun 30 2025
Coronary computed tomography angiography (CCTA) and magnetic resonance imaging (MRI) can predict periprocedural myocardial injury (PMI) after percutaneous coronary intervention (PCI). We aimed to investigate whether integrating MRI with CCTA, using the latest imaging and quantitative techniques, improves PMI prediction and to explore a potential hybrid CCTA-MRI strategy. This prospective, multi-centre study conducted coronary atherosclerosis T1-weighted characterization MRI for patients scheduled for elective PCI for an atherosclerotic lesion detected on CCTA without prior revascularization. PMI was defined as post-PCI troponin-T > 5× the upper reference limit. Using deep learning-enabled software, volumes of total plaque, calcified plaque, non-calcified plaque (NCP), and low-attenuation plaque (LAP; < 30 Hounsfield units) were quantified on CCTA. In non-contrast T1-weighted MRI, high-intensity plaque (HIP) volume was quantified as voxels with signal intensity exceeding that of the myocardium, weighted by their respective intensities. Of the 132 lesions from 120 patients, 43 resulted in PMI. In the CCTA-only strategy, LAP volume (P = 0.012) and NCP volume (P = 0.016) were independently associated with PMI. In integrating MRI with CCTA, LAP volume (P = 0.029), and HIP volume (P = 0.024) emerged as independent predictors. MRI integration with CCTA achieved a higher C-statistic value than CCTA alone (0.880 vs. 0.738; P = 0.004). A hybrid CCTA-MRI strategy, incorporating MRI for lesions with intermediate PMI risk based on CCTA, maintained superior diagnostic accuracy over the CCTA-only strategy (0.803 vs. 0.705; P = 0.028). Integrating MRI with CCTA improves PMI prediction compared with CCTA alone.

Enhancing weakly supervised data augmentation networks for thyroid nodule assessment using traditional and doppler ultrasound images.

Keatmanee C, Songsaeng D, Klabwong S, Nakaguro Y, Kunapinun A, Ekpanyapong M, Dailey MN

pubmed logopapersJun 30 2025
Thyroid ultrasound (US) is an essential tool for detecting and characterizing thyroid nodules. In this study, we propose an innovative approach to enhance thyroid nodule assessment by integrating Doppler US images with grayscale US images through weakly supervised data augmentation networks (WSDAN). Our method reduces background noise by replacing inefficient augmentation strategies, such as random cropping, with an advanced technique guided by bounding boxes derived from Doppler US images. This targeted augmentation significantly improves model performance in both classification and localization of thyroid nodules. The training dataset comprises 1288 paired grayscale and Doppler US images, with an additional 190 pairs used for three-fold cross-validation. To evaluate the model's efficacy, we tested it on a separate set of 190 grayscale US images. Compared to five state-of-the-art models and the original WSDAN, our Enhanced WSDAN model achieved superior performance. For classification, it reached an accuracy of 91%. For localization, it achieved Dice and Jaccard indices of 75% and 87%, respectively, demonstrating its potential as a valuable clinical tool.

Development of a deep learning algorithm for detecting significant coronary artery stenosis in whole-heart coronary magnetic resonance angiography.

Takafuji M, Ishida M, Shiomi T, Nakayama R, Fujita M, Yamaguchi S, Washiyama Y, Nagata M, Ichikawa Y, Inoue Katsuhiro RT, Nakamura S, Sakuma H

pubmed logopapersJun 30 2025
Whole-heart coronary magnetic resonance angiography (CMRA) enables noninvasive and accurate detection of coronary artery stenosis. Nevertheless, the visual interpretation of CMRA is constrained by the observer's experience, necessitating substantial training. The purposes of this study were to develop a deep learning (DL) algorithm using a deep convolutional neural network to accurately detect significant coronary artery stenosis in CMRA and to investigate the effectiveness of this DL algorithm as a tool for assisting in accurate detection of coronary artery stenosis. Nine hundred and fifty-one coronary segments from 75 patients who underwent both CMRA and invasive coronary angiography (ICA) were studied. Significant stenosis was defined as a reduction in luminal diameter of >50% on quantitative ICA. A DL algorithm was proposed to classify CMRA segments into those with and without significant stenosis. A 4-fold cross-validation method was used to train and test the DL algorithm. An observer study was then conducted using 40 segments with stenosis and 40 segments without stenosis. Three radiology experts and 3 radiology trainees independently rated the likelihood of the presence of stenosis in each coronary segment with a continuous scale from 0 to 1, first without the support of the DL algorithm, then using the DL algorithm. Significant stenosis was observed in 84 (8.8%) of the 951 coronary segments. Using the DL algorithm trained by the 4-fold cross-validation method, the area under the receiver operating characteristic curve (AUC) for the detection of segments with significant coronary artery stenosis was 0.890, with 83.3% sensitivity, 83.6% specificity and 83.6% accuracy. In the observer study, the average AUC of trainees was significantly improved using the DL algorithm (0.898) compared to that without the algorithm (0.821, p<0.001). The average AUC of experts tended to be higher with the DL algorithm (0.897), but not significantly different from that without the algorithm (0.879, p=0.082). We developed a DL algorithm offering high diagnostic accuracy for detecting significant coronary artery stenosis on CMRA. Our proposed DL algorithm appears to be an effective tool for assisting inexperienced observers to accurately detect coronary artery stenosis in whole-heart CMRA.

Using a large language model for post-deployment monitoring of FDA approved AI: pulmonary embolism detection use case.

Sorin V, Korfiatis P, Bratt AK, Leiner T, Wald C, Butler C, Cook CJ, Kline TL, Collins JD

pubmed logopapersJun 30 2025
Artificial intelligence (AI) is increasingly integrated into clinical workflows. The performance of AI in production can diverge from initial evaluations. Post-deployment monitoring (PDM) remains a challenging ingredient of ongoing quality assurance once AI is deployed in clinical production. To develop and evaluate a PDM framework that uses large language models (LLMs) for free-text classification of radiology reports, and human oversight. We demonstrate its application to monitor a commercially vended pulmonary embolism (PE) detection AI (CVPED). We retrospectively analyzed 11,999 CT pulmonary angiography (CTPA) studies performed between 04/30/2023-06/17/2024. Ground truth was determined by combining LLM-based radiology-report classification and the CVPED outputs, with human review of discrepancies. We simulated a daily monitoring framework to track discrepancies between CVPED and the LLM. Drift was defined when discrepancy rate exceeded a fixed 95% confidence interval (CI) for seven consecutive days. The CI and the optimal retrospective assessment period were determined from a stable dataset with consistent performance. We simulated drift by systematically altering CVPED or LLM sensitivity and specificity, and we modeled an approach to detect data shifts. We incorporated a human-in-the-loop selective alerting framework for continuous prospective evaluation and to investigate potential for incremental detection. Of 11,999 CTPAs, 1,285 (10.7%) had PE. Overall, 373 (3.1%) had discrepant classifications between CVPED and LLM. Among 111 CVPED-positive and LLM-negative cases, 29 would have triggered an alert due to the radiologist not interacting with CVPED. Of those, 24 were CVPED false-positives, one was an LLM false-negative, and the framework ultimately identified four true-alerts for incremental PE cases. The optimal retrospective assessment period for drift detection was determined to be two months. A 2-3% decline in model specificity caused a 2-3-fold increase in discrepancies, while a 10% drop in sensitivity was required to produce a similar effect. For example, a 2.5% drop in LLM specificity led to a 1.7-fold increase in CVPED-negative-LLM-positive discrepancies, which would have taken 22 days to detect using the proposed framework. A PDM framework combining LLM-based free-text classification with a human-in-the-loop alerting system can continuously track an image-based AI's performance, alert for performance drift, and provide incremental clinical value.

Automated Finite Element Modeling of the Lumbar Spine: A Biomechanical and Clinical Approach to Spinal Load Distribution and Stress Analysis.

Ahmadi M, Zhang X, Lin M, Tang Y, Engeberg ED, Hashemi J, Vrionis FD

pubmed logopapersJun 30 2025
Biomechanical analysis of the lumbar spine is vital for understanding load distribution and stress patterns under physiological conditions. Traditional finite element analysis (FEA) relies on time-consuming manual segmentation and meshing, leading to long runtimes and inconsistent accuracy. Automating this process improves efficiency and reproducibility. This study introduces an automated FEA methodology for lumbar spine biomechanics, integrating deep learning-based segmentation with computational modeling to streamline workflows from imaging to simulation. Medical imaging data were segmented using deep learning frameworks for vertebrae and intervertebral discs. Segmented structures were transformed into optimized surface meshes via Laplacian smoothing and decimation. Using the Gibbon library and FEBio, FEA models incorporated cortical and cancellous bone, nucleus, annulus, cartilage, and ligaments. Ligament attachments used spherical coordinate-based segmentation; vertebral endplates were extracted via principal component analysis (PCA) for cartilage modeling. Simulations assessed stress, strain, and displacement under axial rotation, extension, flexion, and lateral bending. The automated pipeline cut model preparation time by 97.9%, from over 24 hours to 30 minutes and 49.48 seconds. Biomechanical responses aligned with experimental and traditional FEA data, showing high posterior element loads in extension and flexion, consistent ligament forces, and disc deformations. The approach enhanced reproducibility with minimal manual input. This automated methodology provides an efficient, accurate framework for lumbar spine biomechanics, eliminating manual segmentation challenges. It supports clinical diagnostics, implant design, and rehabilitation, advancing computational and patient-specific spinal studies. Rapid simulations enhance implant optimization, and early detection of degenerative spinal issues, improving personalized treatment and research.
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