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Mexican dataset of digital mammograms (MEXBreast) with suspicious clusters of microcalcifications.

Lozoya RSL, Barragán KN, Domínguez HJO, Azuela JHS, Sánchez VGC, Villegas OOV

pubmed logopapersJun 1 2025
Breast cancer is one of the most prevalent cancers affecting women worldwide. Early detection and treatment are crucial in significantly reducing mortality rates Microcalcifications (MCs) are of particular importance among the various breast lesions. These tiny calcium deposits within breast tissue are present in approximately 30% of malignant tumors and can serve as critical indirect indicators of early-stage breast cancer. Three or more MCs within an area of 1 cm² are considered a Microcalcification Cluster (MCC) and assigned a BI-RADS category 4, indicating a suspicion of malignancy. Mammography is the most used technique for breast cancer detection. Approximately one in two mammograms showing MCCs is confirmed as cancerous through biopsy. MCCs are challenging to detect, even for experienced radiologists, underscoring the need for computer-aided detection tools such as Convolutional Neural Networks (CNNs). CNNs require large amounts of domain-specific data with consistent resolutions for effective training. However, most publicly available mammogram datasets either lack resolution information or are compiled from heterogeneous sources. Additionally, MCCs are often either unlabeled or sparsely represented in these datasets, limiting their utility for training CNNs. In this dataset, we present the MEXBreast, an annotated MCCs Mexican digital mammogram database, containing images from resolutions of 50, 70, and 100 microns. MEXBreast aims to support the training, validation, and testing of deep learning CNNs.

Comparing efficiency of an attention-based deep learning network with contemporary radiological workflow for pulmonary embolism detection on CTPA: A retrospective study.

Singh G, Singh A, Kainth T, Suman S, Sakla N, Partyka L, Phatak T, Prasanna P

pubmed logopapersJun 1 2025
Pulmonary embolism (PE) is the third most fatal cardiovascular disease in the United States. Currently, Computed Tomography Pulmonary Angiography (CTPA) serves as diagnostic gold standard for detecting PE. However, its efficacy is limited by factors such as contrast bolus timing, physician-dependent diagnostic accuracy, and time taken for scan interpretation. To address these limitations, we propose an AI-based PE triaging model (AID-PE) designed to predict the presence and key characteristics of PE on CTPA. This model aims to enhance diagnostic accuracy, efficiency, and the speed of PE identification. We trained AID-PE on the RSNA-STR PE CT (RSPECT) Dataset, N = 7279 and subsequently tested it on an in-house dataset (n = 106). We evaluated efficiency in a separate dataset (D<sub>4</sub>, n = 200) by comparing the time from scan to report in standard PE detection workflow versus AID-PE. A comparative analysis showed that AID-PE had an AUC/accuracy of 0.95/0.88. In contrast, a Convolutional Neural Network (CNN) classifier and a CNN-Long Short-Term Memory (LSTM) network without an attention module had an AUC/accuracy of 0.5/0.74 and 0.88/0.65, respectively. Our model achieved AUCs of 0.82 and 0.95 for detecting PE on the validation dataset and the independent test set, respectively. On D<sub>4</sub>, AID-PE took an average of 1.32 s to screen for PE across 148 CTPA studies, compared to an average of 40 min in contemporary workflow. AID-PE outperformed a baseline CNN classifier and a single-stage CNN-LSTM network without an attention module. Additionally, its efficiency is comparable to the current radiological workflow.

A Novel Theranostic Strategy for Malignant Pulmonary Nodules by Targeted CECAM6 with <sup>89</sup>Zr/<sup>131</sup>I-Labeled Tinurilimab.

Chen C, Zhu K, Wang J, Pan D, Wang X, Xu Y, Yan J, Wang L, Yang M

pubmed logopapersJun 1 2025
Lung adenocarcinoma (LUAD) constitutes a major cause of cancer-related fatalities worldwide. Early identification of malignant pulmonary nodules constitutes the most effective approach to reducing the mortality of LUAD. Despite the wide application of low-dose computed tomography (LDCT) in the early screening of LUAD, the identification of malignant pulmonary nodules by it remains a challenge. In this study, CEACAM6 (also called CD66c) as a potential biomarker is investigated for differentiating malignant lung nodules. Then, the CEACAM6-targeting monoclonal antibody (mAb, tinurilimab) is radiolabeled with <sup>89</sup>Zr and <sup>131</sup>I for theranostic applications. In terms of diagnosis, machine learning confirms CEACAM6 as a specific extracellular marker for discrimination between LUAD and benign nodules. The <sup>89</sup>Zr-labeled mAb is highly specific uptake in CEACAM6-positive LUAD via positron emission tomography (PET) imaging, and its ability to distinguish in malignant pulmonary nodules are significantly higher than that of <sup>18</sup>F Fluorodeoxyglucose (FDG) by positron emission tomography/magnetic resonance (PET/MR) imaging. While the <sup>131</sup>I-labeled mAb serving as the therapeutic aspect has significantly suppressed tumor growth after a single treatment. These results proves that <sup>89</sup>Zr/<sup>131</sup>I-labeled tinurilimab facilitates the differential capacity of malignant pulmonary nodules and radioimmunotherapy of LUAD in preclinical models. Further clinical evaluation and translation of this CEACAM6-targeted theranostics may be significant help in diagnosis and treatment of LUAD.

Artificial intelligence medical image-aided diagnosis system for risk assessment of adjacent segment degeneration after lumbar fusion surgery.

Dai B, Liang X, Dai Y, Ding X

pubmed logopapersJun 1 2025
The existing assessment of adjacent segment degeneration (ASD) risk after lumbar fusion surgery focuses on a single type of clinical information or imaging manifestations. In the early stages, it is difficult to show obvious degeneration characteristics, and the patients' true risks cannot be fully revealed. The evaluation results based on imaging ignore the clinical symptoms and changes in quality of life of patients, limiting the understanding of the natural process of ASD and the comprehensive assessment of its risk factors, and hindering the development of effective prevention strategies. To improve the quality of postoperative management and effectively identify the characteristics of ASD, this paper studies the risk assessment of ASD after lumbar fusion surgery by combining the artificial intelligence (AI) medical image-aided diagnosis system. First, the collaborative attention mechanism is adopted to start with the extraction of single-modal features and fuse the multi-modal features of computed tomography (CT) and magnetic resonance imaging (MRI) images. Then, the similarity matrix is weighted to achieve the complementarity of multi-modal information, and the stability of feature extraction is improved through the residual network structure. Finally, the fully connected network (FCN) is combined with the multi-task learning framework to provide a more comprehensive assessment of the risk of ASD. The experimental analysis results show that compared with three advanced models, three dimensional-convolutional neural networks (3D-CNN), U-Net++, and deep residual networks (DRN), the accuracy of the model in this paper is 3.82 %, 6.17 %, and 6.68 % higher respectively; the precision is 0.56 %, 1.09 %, and 4.01 % higher respectively; the recall is 3.41 %, 4.85 %, and 5.79 % higher respectively. The conclusion shows that the AI medical image-aided diagnosis system can help to accurately identify the characteristics of ASD and effectively assess the risks after lumbar fusion surgery.

Association of the characteristics of brain magnetic resonance imaging with genes related to disease onset in schizophrenia patients.

Lin J, Wang B, Chen S, Cao F, Zhang J, Lu Z

pubmed logopapersJun 1 2025
Schizophrenia (SCH) is a complex neurodevelopmental disorder, whose pathogenesis is not fully elucidated. This article aims to reveal disease-specific brain structural and functional changes and their potential genetic basis by analyzing the characteristics of brain magnetic resonance imaging (MRI) in SCH patients and related gene expression patterns. Differentially expressed genes (DEGs) between SCH and healthy control (NC) groups in the GSE48072 dataset were identified and functionally analyzed, and a protein-protein interaction (PPI) network was fabricated to screen for core genes (CGs). Meanwhile, MRI data from the COBRE, the Human Connectome Project (HCP), the 1000 Functional Connectomes Project (FCP), and the Consortium for Reliability and Reproducibility (CoRR) were utilized to explore differences in brain activity patterns between SCH patients and NC group using a 3D deep aggregation network (3D DANet) machine learning approach. A correlation analysis was performed between the identified CGs and MRI imaging characteristics. 82 DEGs were collected from the GSE48072 dataset, primarily involved in cytotoxic granules, growth factor binding, and graft-versus-host disease pathways. The construction of the PPI network revealed KLRD1, KLRF1, CD244, GZMH, GZMA, GZMB, PRF1, and SLAMF6 as CGs. SCH patients exhibited relatively enhanced activity patterns in the frontoparietal attention network (FAN) and default mode network (DMN) across four datasets, while showing a trend of weakening in most other networks. The 3D DANet demonstrated higher accuracy, specificity, and sensitivity in brain image classification. The correlation between enhancement of the DMN and genetic abnormalities was the strongest, followed by the enhancement of the frontal and parietal attention networks. In contrast, the correlation between the weakening of the sensory-motor network and occipital network and genetic abnormalities was relatively weak. The strongest correlation was observed between MRI characteristics and the KLRD1 and CD244 genes. The granzyme-mediated programmed cell death signaling pathway is related to pathogenesis of SCH, and CD244 may serve as potential biological markers for diagnosing SCH. The correlation between enhancement of the DMN and genetic abnormalities was the strongest, followed by the enhancement of the frontal and parietal attention networks. In contrast, the correlation between weakening of the sensory-motor network and occipital network and genetic abnormalities was relatively weak. Additionally, the strongest correlation was observed between MRI features and the KLRD1 and CD244 genes. The use of the 3D DANet method has improved the detection precision of brain structural and functional changes in SCH patients, providing a new perspective for understanding the biological basis of the disease.

A Trusted Medical Image Zero-Watermarking Scheme Based on DCNN and Hyperchaotic System.

Xiang R, Liu G, Dang M, Wang Q, Pan R

pubmed logopapersJun 1 2025
The zero-watermarking methods provide a means of lossless, which was adopted to protect medical image copyright requiring high integrity. However, most existing studies have only focused on robustness and there has been little discussion about the analysis and experiment on discriminability. Therefore, this paper proposes a trusted robust zero-watermarking scheme for medical images based on Deep convolution neural network (DCNN) and the hyperchaotic encryption system. Firstly, the medical image is converted into several feature map matrices by the specific convolution layer of DCNN. Then, a stable Gram matrix is obtained by calculating the colinear correlation between different channels in feature map matrices. Finally, the Gram matrixes of the medical image and the feature map matrixes of the watermark image are fused by the trained DCNN to generate the zero-watermark. Meanwhile, we propose two feature evaluation criteria for finding differentiated eigenvalues. The eigenvalue is used as the explicit key to encrypt the generated zero-watermark by Lorenz hyperchaotic encryption, which enhances security and discriminability. The experimental results show that the proposed scheme can resist common image attacks and geometric attacks, and is distinguishable in experiments, being applicable for the copyright protection of medical images.

IM-Diff: Implicit Multi-Contrast Diffusion Model for Arbitrary Scale MRI Super-Resolution.

Liu L, Zou J, Xu C, Wang K, Lyu J, Xu X, Hu Z, Qin J

pubmed logopapersJun 1 2025
Diffusion models have garnered significant attention for MRI Super-Resolution (SR) and have achieved promising results. However, existing diffusion-based SR models face two formidable challenges: 1) insufficient exploitation of complementary information from multi-contrast images, which hinders the faithful reconstruction of texture details and anatomical structures; and 2) reliance on fixed magnification factors, such as 2× or 4×, which is impractical for clinical scenarios that require arbitrary scale magnification. To circumvent these issues, this paper introduces IM-Diff, an implicit multi-contrast diffusion model for arbitrary-scale MRI SR, leveraging the merits of both multi-contrast information and the continuous nature of implicit neural representation (INR). Firstly, we propose an innovative hierarchical multi-contrast fusion (HMF) module with reference-aware cross Mamba (RCM) to effectively incorporate target-relevant information from the reference image into the target image, while ensuring a substantial receptive field with computational efficiency. Secondly, we introduce multiple wavelet INR magnification (WINRM) modules into the denoising process by integrating the wavelet implicit neural non-linearity, enabling effective learning of continuous representations of MR images. The involved wavelet activation enhances space-frequency concentration, further bolstering representation accuracy and robustness in INR. Extensive experiments on three public datasets demonstrate the superiority of our method over existing state-of-the-art SR models across various magnification factors.

Alzheimer's disease prediction using 3D-CNNs: Intelligent processing of neuroimaging data.

Rahman AU, Ali S, Saqia B, Halim Z, Al-Khasawneh MA, AlHammadi DA, Khan MZ, Ullah I, Alharbi M

pubmed logopapersJun 1 2025
Alzheimer's disease (AD) is a severe neurological illness that demolishes memory and brain functioning. This disease affects an individual's capacity to work, think, and behave. The proportion of individuals suffering from AD is rapidly increasing. It flatters a leading cause of disability and impacts millions of people worldwide. Early detection reduces disease expansion, provides more effective therapies, and leads to better results. However, predicting AD at an early stage is complex since its clinical symptoms match with normal aging, mild cognitive impairment (MCI), and neurodegenerative disorders. Prior studies indicate that early diagnosis is improved by the utilization of magnetic resonance imaging (MRI). However, MRI data is scarce, noisy, and extremely diverse among scanners and patient populations. The 2D CNNs analyze 3D data slices separately, resulting in a loss of inter-slice information and contextual coherence required to detect subtle and diffuse brain alterations. This study offered a novel 3Dimensional-Convolutional Neural Network (3D-CNN) and intelligent preprocessing pipeline for AD prediction. This work uses an intelligent frame selection and 3D dilated convolutions mechanism to recognize the most informative slices associated with AD disease. This enabled the model to capture subtle and diffuse structural changes across the brain visible in MRI scans. The proposed model examined brain structures by recognizing small volumetric changes associated with AD and acquiring spatial hierarchies within MRI data. After conducting various experiments, we observed that the proposed 3D-CNNs are highly proficient in capturing early brain changes. To validate the model's performance, a benchmark dataset called AD Neuroimaging Initiative (ADNI) is used and achieves a maximum accuracy of 92.89 %, outperforming state-of-the-art approaches.

MedKAFormer: When Kolmogorov-Arnold Theorem Meets Vision Transformer for Medical Image Representation.

Wang G, Zhu Q, Song C, Wei B, Li S

pubmed logopapersJun 1 2025
Vision Transformers (ViTs) suffer from high parameter complexity because they rely on Multi-layer Perceptrons (MLPs) for nonlinear representation. This issue is particularly challenging in medical image analysis, where labeled data is limited, leading to inadequate feature representation. Existing methods have attempted to optimize either the patch embedding stage or the non-embedding stage of ViTs. Still, they have struggled to balance effective modeling, parameter complexity, and data availability. Recently, the Kolmogorov-Arnold Network (KAN) was introduced as an alternative to MLPs, offering a potential solution to the large parameter issue in ViTs. However, KAN cannot be directly integrated into ViT due to challenges such as handling 2D structured data and dimensionality catastrophe. To solve this problem, we propose MedKAFormer, the first ViT model to incorporate the Kolmogorov-Arnold (KA) theorem for medical image representation. It includes a Dynamic Kolmogorov-Arnold Convolution (DKAC) layer for flexible nonlinear modeling in the patch embedding stage. Additionally, it introduces a Nonlinear Sparse Token Mixer (NSTM) and a Nonlinear Dynamic Filter (NDF) in the non-embedding stage. These components provide comprehensive nonlinear representation while reducing model overfitting. MedKAFormer reduces parameter complexity by 85.61% compared to ViT-Base and achieves competitive results on 14 medical datasets across various imaging modalities and structures.
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