A macro-micro-macro radiogenomic framework identifies FIBCD1 as a key immune-modulating biomarker in breast cancer.
Authors
Affiliations (12)
Affiliations (12)
- Department of Radiology, Jiaxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chinese Medical University, Jiaxing, China.
- Guangdong Provincial Key Laboratory of Artificial Intelligence in Medical Image Analysis and Application, Guangzhou, China.
- Guangdong Cardiovascular Institute, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China.
- Department of Radiology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, China.
- Department of Radiology, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
- Cancer Center, Department of Radiology, Zhejiang Provincial People's Hospital, Affiliated People's Hospital, Hangzhou Medical College, Hangzhou, China.
- The First School of Clinical Medicine, Zhejiang Chinese Medical University, Hangzhou, China.
- Department of Radiology, Jiaxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chinese Medical University, Jiaxing, China. [email protected].
- Jiaxing TCM Hospital Affiliated to Zhejiang Chinese Medical University, 1501 Zhongshan East Road, Jiaxing, 314000, China. [email protected].
- Department of Radiology, Zhongshan Hospital, Shanghai Institute of Medical Imaging, Fudan University, No. 180 Fenglin Road, Xuhui District, Shanghai, 200032, China. [email protected].
- Department of Clinical Laboratory, Jiaxing Maternity and Children Health Care Hospital, Jiaxing, China. [email protected].
- Jiaxing Maternity and Children Health Care Hospital, 2468 Zhonghuan East Road, Jiaxing, 314000, China. [email protected].
Abstract
Breast cancer prognosis remains challenging due to tumor heterogeneity and the limited predictive power of conventional clinical models. Integrating imaging features with molecular data may improve individualized risk stratification and clinical decision-making. We developed a closed-loop prognostic model based on a macro-micro-macro radiogenomic framework that combines MRI-based radiomics with transcriptomic and proteomic data. A total of 788 radiomics-guided candidate genes were screened. Prognostic gene signatures were identified using multiple machine learning algorithms and validated in TCGA and GEO cohorts. We further analyzed immune infiltration, drug sensitivity, and gene enrichment profiles across risk groups. Causal relationships between gene expression and survival were assessed using Mendelian randomization. Hub gene expression was validated in patient plasma using ELISA, and Olink proteomics and radiomic information was conducted for biological association analysis. XGBoost-Cox prognostic model was constructed integrating 10 consensus genes identified by stepwise Cox regression and Elastic Net, achieving the concordance index 0.703 in GEO validation cohort. High-risk patients showed reduced immune activation, increased expression of pro-inflammatory cytokines, and worse survival. Among consensus genes, FIBCD1 was demonstrated as a hub gene with a significant causal association with survival. Its expression was significantly elevated in high-risk plasma samples, positively correlated with inflammatory proteins (e.g., OSM, and TNFSF14), and associated with MRI phenotype, including tumor sphericity and inverse difference normalized feature. Our findings establish a novel radiogenomic strategy that bridges MRI-derived imaging phenotypes with molecular mechanisms. FIBCD1 may serve as an immune-modulating prognostic biomarker linked to imaging characteristics, providing new insights into non-invasive breast cancer risk assessment and therapeutic targeting.