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Exploring learning transferability in deep segmentation of colorectal cancer liver metastases.

Authors

Abbas M,Badic B,Andrade-Miranda G,Bourbonne V,Jaouen V,Visvikis D,Conze PH

Affiliations (5)

  • LaTIM UMR 1101, Inserm, Brest, France; University of Western Brittany, Brest, France.
  • LaTIM UMR 1101, Inserm, Brest, France; University Hospital of Brest, Brest, France.
  • LaTIM UMR 1101, Inserm, Brest, France; University of Western Brittany, Brest, France; SyCoIA, IMT Mines Ales, Ales, France.
  • LaTIM UMR 1101, Inserm, Brest, France; IMT Atlantique, Brest, France.
  • LaTIM UMR 1101, Inserm, Brest, France. Electronic address: [email protected].

Abstract

Ensuring the seamless transfer of knowledge and models across various datasets and clinical contexts is of paramount importance in medical image segmentation. This is especially true for liver lesion segmentation which plays a key role in pre-operative planning and treatment follow-up. Despite the progress of deep learning algorithms using Transformers, automatically segmenting small hepatic metastases remains a persistent challenge. This can be attributed to the degradation of small structures due to the intrinsic process of feature down-sampling inherent to many deep architectures, coupled with the imbalance between foreground metastases voxels and background. While similar challenges have been observed for liver tumors originated from hepatocellular carcinoma, their manifestation in the context of liver metastasis delineation remains under-explored and require well-defined guidelines. Through comprehensive experiments, this paper aims to bridge this gap and to demonstrate the impact of various transfer learning schemes from off-the-shelf datasets to a dataset containing liver metastases only. Our scale-specific evaluation reveals that models trained from scratch or with domain-specific pre-training demonstrate greater proficiency.

Topics

Journal Article

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