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Gastrointestinal bleeding detection on digital subtraction angiography using convolutional neural networks with and without temporal information.

Smetanick D, Naidu S, Wallace A, Knuttinen MG, Patel I, Alzubaidi S

pubmed logopapersAug 7 2025
Digital subtraction angiography (DSA) offers a real-time approach to locating lower gastrointestinal (GI) bleeding. However, many sources of bleeding are not easily visible on angiograms. This investigation aims to develop a machine learning tool that can locate GI bleeding on DSA prior to transarterial embolization. All mesenteric artery angiograms and arterial embolization DSA images obtained in the interventional radiology department between January 1, 2007, and December 31, 2021, were analyzed. These images were acquired using fluoroscopy imaging systems (Siemens Healthineers, USA). Thirty-nine unique series of bleeding images were augmented to train two-dimensional (2D) and three-dimensional (3D) residual neural networks (ResUNet++) for image segmentation. The 2D ResUNet++ network was trained on 3,548 images and tested on 394 images, whereas the 3D ResUNet++ network was trained on 316 3D objects and tested on 35 objects. For each case, both manually cropped images focused on the GI bleed and uncropped images were evaluated, with a superimposition post-processing (SIPP) technique applied to both image types. Based on both quantitative and qualitative analyses, the 2D ResUNet++ network significantly outperformed the 3D ResUNet++ model. In the qualitative evaluation, the 2D ResUNet++ model achieved the highest accuracy across both 128 × 128 and 256 × 256 input resolutions when enhanced with the SIPP technique, reaching accuracy rates between 95% and 97%. However, despite the improved detection consistency provided by SIPP, a reduction in Dice similarity coefficients was observed compared with models without post-processing. Specifically, the 2D ResUNet++ model combined with SIPP achieved a Dice accuracy of only 80%. This decline is primarily attributed to an increase in false positive predictions introduced by the temporal propagation of segmentation masks across frames. Both 2D and 3D ResUNet++ networks can be trained to locate GI bleeding on DSA images prior to transarterial embolization. However, further research and refinement are needed before this technology can be implemented in DSA for real-time prediction. Automated detection of GI bleeding in DSA may reduce time to embolization, thereby improving patient outcomes.

A Workflow-Efficient Approach to Pre- and Post-Operative Assessment of Weight-Bearing Three-Dimensional Knee Kinematics.

Banks SA, Yildirim G, Jachode G, Cox J, Anderson O, Jensen A, Cole JD, Kessler O

pubmed logopapersJul 1 2025
Knee kinematics during daily activities reflect disease severity preoperatively and are associated with clinical outcomes after total knee arthroplasty (TKA). It is widely believed that measured kinematics would be useful for preoperative planning and postoperative assessment. Despite decades-long interest in measuring three-dimensional (3D) knee kinematics, no methods are available for routine, practical clinical examinations. We report a clinically practical method utilizing machine-learning-enhanced software and upgraded C-arm fluoroscopy for the accurate and time-efficient measurement of pre-TKA and post-TKA 3D dynamic knee kinematics. Using a common C-arm with an upgraded detector and software, we performed an 8-s horizontal sweeping pulsed fluoroscopic scan of the weight-bearing knee joint. The patient's knee was then imaged using pulsed C-arm fluoroscopy while performing standing, kneeling, squatting, stair, chair, and gait motion activities. We used limited-arc cone-beam reconstruction methods to create 3D models of the femur and tibia/fibula bones with implants, which can then be used to perform model-image registration to quantify the 3D knee kinematics. The proposed protocol can be accomplished by an individual radiology technician in ten minutes and does not require additional equipment beyond a step and stool. The image analysis can be performed by a computer onboard the upgraded c-arm or in the cloud, before loading the examination results into the Picture Archiving and Communication System and Electronic Medical Record systems. Weight-bearing kinematics affects knee function pre- and post-TKA. It has long been exclusively the domain of researchers to make such measurements. We present an approach that leverages common, but digitally upgraded, imaging hardware and software to implement an efficient examination protocol for accurately assessing 3D knee kinematics. With these capabilities, it will be possible to include dynamic 3D knee kinematics as a component of the routine clinical workup for patients who have diseased or replaced knees.

GAN Inversion for Data Augmentation to Improve Colonoscopy Lesion Classification.

Golhar MV, Bobrow TL, Ngamruengphong S, Durr NJ

pubmed logopapersJun 1 2025
A major challenge in applying deep learning to medical imaging is the paucity of annotated data. This study explores the use of synthetic images for data augmentation to address the challenge of limited annotated data in colonoscopy lesion classification. We demonstrate that synthetic colonoscopy images generated by Generative Adversarial Network (GAN) inversion can be used as training data to improve polyp classification performance by deep learning models. We invert pairs of images with the same label to a semantically rich and disentangled latent space and manipulate latent representations to produce new synthetic images. These synthetic images maintain the same label as the input pairs. We perform image modality translation (style transfer) between white light and narrow-band imaging (NBI). We also generate realistic synthetic lesion images by interpolating between original training images to increase the variety of lesion shapes in the training dataset. Our experiments show that GAN inversion can produce multiple colonoscopy data augmentations that improve the downstream polyp classification performance by 2.7% in F1-score and 4.9% in sensitivity over other methods, including state-of-the-art data augmentation. Testing on unseen out-of-domain data also showcased an improvement of 2.9% in F1-score and 2.7% in sensitivity. This approach outperforms other colonoscopy data augmentation techniques and does not require re-training multiple generative models. It also effectively uses information from diverse public datasets, even those not specifically designed for the targeted downstream task, resulting in strong domain generalizability. Project code and model: https://github.com/DurrLab/GAN-Inversion.

Training a deep learning model to predict the anatomy irradiated in fluoroscopic x-ray images.

Guo L, Trujillo D, Duncan JR, Thomas MA

pubmed logopapersMay 26 2025
Accurate patient dosimetry estimates from fluoroscopically-guided interventions (FGIs) are hindered by limited knowledge of the specific anatomy that was irradiated. Current methods use data reported by the equipment to estimate the patient anatomy exposed during each irradiation event. We propose a deep learning algorithm to automatically match 2D fluoroscopic images with corresponding anatomical regions in computational phantoms, enabling more precise patient dose estimates. Our method involves two main steps: (1) simulating 2D fluoroscopic images, and (2) developing a deep learning algorithm to predict anatomical coordinates from these images. For part (1), we utilized DeepDRR for fast and realistic simulation of 2D x-ray images from 3D computed tomography datasets. We generated a diverse set of simulated fluoroscopic images from various regions with different field sizes. In part (2), we employed a Residual Neural Network (ResNet) architecture combined with metadata processing to effectively integrate patient-specific information (age and gender) to learn the transformation between 2D images and specific anatomical coordinates in each representative phantom. For the Modified ResNet model, we defined an allowable error range of ± 10 mm. The proposed method achieved over 90% of predictions within ± 10 mm, with strong alignment between predicted and true coordinates as confirmed by Bland-Altman analysis. Most errors were within ± 2%, with outliers beyond ± 5% primarily in Z-coordinates for infant phantoms due to their limited representation in the training data. These findings highlight the model's accuracy and its potential for precise spatial localization, while emphasizing the need for improved performance in specific anatomical regions. In this work, a comprehensive simulated 2D fluoroscopy image dataset was developed, addressing the scarcity of real clinical datasets and enabling effective training of deep-learning models. The modified ResNet successfully achieved precise prediction of anatomical coordinates from the simulated fluoroscopic images, enabling the goal of more accurate patient-specific dosimetry.
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