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The automatic pelvic screw corridor planning for intact pelvises based on deep learning deformable registration.

Ju F, Chai X, Zhao J, Dong M

pubmed logopapersMay 13 2025
Percutaneous screw fixation technique in pelvic trauma surgery is an extremely challenging operation that typically requires a trial-and-error insertion process under the guidance of continuous intraoperative X-ray. This process can be simplified by utilizing surgical navigation systems. Understanding the complexity of the intraosseous pelvis corridor is essential for establishing the optimal screw corridor, which further facilitates preoperative planning and intraoperative application. Traditional screw corridor search algorithms necessitate traversing the entrance and exit areas of the screw and calculating the distance from the corridor axis to the bone surface to ascertain the location of the screw. This process is computationally complex, and manual measurement by the physician is time consuming, labor intensive, and empirically dependent. In this study, we propose an automated planning algorithm for pelvic screw corridors based on deep learning deformable registration technology, which can efficiently and accurately identify the optimal screw corridors. Compared to traditional methods, the innovations of this study include: (1) the introduction of corridor safety range constraints on screw positioning, which enhances search efficiency; (2) the application of deep learning deformable registration to facilitate the automatic annotation of the screw entrance and exit areas, as well as the safety range of the corridor; and (3) the development of a highly efficient algorithm for optimal corridor searching, quickly determining the corridor without traversing the entrance and exit areas and enhancing efficiency via a vector-based diameter calculation method. The whole framework of the algorithm consists of three key components: atlas generation module, deformable registration and optimal corridor searching strategy. In the experiments, we test the performance of the proposed algorithm on 198 intact pelvises for calculating the optimal corridor of anterior column corridor and S1 sacroiliac screws. The results show that the new algorithm can increase the corridor diameter by 2.1%-3.3% compared to manual measurements, while significantly reducing the average time from 1038s and 3398s to 18.9s and 26.7s on anterior column corridor and S1 sacroiliac corridor, respectively, compared to the traditional screw searching algorithm. This demonstrates the advantages of the algorithm in terms of efficiency and accuracy. However, the current method is validated only on intact pelvises; further research is required for pelvic fracture scenarios.

BodyGPS: Anatomical Positioning System

Halid Ziya Yerebakan, Kritika Iyer, Xueqi Guo, Yoshihisa Shinagawa, Gerardo Hermosillo Valadez

arxiv logopreprintMay 12 2025
We introduce a new type of foundational model for parsing human anatomy in medical images that works for different modalities. It supports supervised or unsupervised training and can perform matching, registration, classification, or segmentation with or without user interaction. We achieve this by training a neural network estimator that maps query locations to atlas coordinates via regression. Efficiency is improved by sparsely sampling the input, enabling response times of less than 1 ms without additional accelerator hardware. We demonstrate the utility of the algorithm in both CT and MRI modalities.

Groupwise image registration with edge-based loss for low-SNR cardiac MRI.

Lei X, Schniter P, Chen C, Ahmad R

pubmed logopapersMay 12 2025
The purpose of this study is to perform image registration and averaging of multiple free-breathing single-shot cardiac images, where the individual images may have a low signal-to-noise ratio (SNR). To address low SNR encountered in single-shot imaging, especially at low field strengths, we propose a fast deep learning (DL)-based image registration method, called Averaging Morph with Edge Detection (AiM-ED). AiM-ED jointly registers multiple noisy source images to a noisy target image and utilizes a noise-robust pre-trained edge detector to define the training loss. We validate AiM-ED using synthetic late gadolinium enhanced (LGE) images from the MR extended cardiac-torso (MRXCAT) phantom and free-breathing single-shot LGE images from healthy subjects (24 slices) and patients (5 slices) under various levels of added noise. Additionally, we demonstrate the clinical feasibility of AiM-ED by applying it to data from patients (6 slices) scanned on a 0.55T scanner. Compared with a traditional energy-minimization-based image registration method and DL-based VoxelMorph, images registered using AiM-ED exhibit higher values of recovery SNR and three perceptual image quality metrics. An ablation study shows the benefit of both jointly processing multiple source images and using an edge map in AiM-ED. For single-shot LGE imaging, AiM-ED outperforms existing image registration methods in terms of image quality. With fast inference, minimal training data requirements, and robust performance at various noise levels, AiM-ED has the potential to benefit single-shot CMR applications.

Improving Generalization of Medical Image Registration Foundation Model

Jing Hu, Kaiwei Yu, Hongjiang Xian, Shu Hu, Xin Wang

arxiv logopreprintMay 10 2025
Deformable registration is a fundamental task in medical image processing, aiming to achieve precise alignment by establishing nonlinear correspondences between images. Traditional methods offer good adaptability and interpretability but are limited by computational efficiency. Although deep learning approaches have significantly improved registration speed and accuracy, they often lack flexibility and generalizability across different datasets and tasks. In recent years, foundation models have emerged as a promising direction, leveraging large and diverse datasets to learn universal features and transformation patterns for image registration, thus demonstrating strong cross-task transferability. However, these models still face challenges in generalization and robustness when encountering novel anatomical structures, varying imaging conditions, or unseen modalities. To address these limitations, this paper incorporates Sharpness-Aware Minimization (SAM) into foundation models to enhance their generalization and robustness in medical image registration. By optimizing the flatness of the loss landscape, SAM improves model stability across diverse data distributions and strengthens its ability to handle complex clinical scenarios. Experimental results show that foundation models integrated with SAM achieve significant improvements in cross-dataset registration performance, offering new insights for the advancement of medical image registration technology. Our code is available at https://github.com/Promise13/fm_sam}{https://github.com/Promise13/fm\_sam.

CirnetamorNet: An ultrasonic temperature measurement network for microwave hyperthermia based on deep learning.

Cui F, Du Y, Qin L, Li B, Li C, Meng X

pubmed logopapersMay 9 2025
Microwave thermotherapy is a promising approach for cancer treatment, but accurate noninvasive temperature monitoring remains challenging. This study aims to achieve accurate temperature prediction during microwave thermotherapy by efficiently integrating multi-feature data, thereby improving the accuracy and reliability of noninvasive thermometry techniques. We proposed an enhanced recurrent neural network architecture, namely CirnetamorNet. The experimental data acquisition system is developed by using the material that simulates the characteristics of human tissue to construct the body model. Ultrasonic image data at different temperatures were collected, and 5 parameters with high temperature correlation were extracted from gray scale covariance matrix and Homodyned-K distribution. Using multi-feature data as input and temperature prediction as output, the CirnetamorNet model is constructed by multi-head attention mechanism. Model performance was evaluated by analyzing training losses, predicting mean square error and accuracy, and ablation experiments were performed to evaluate the contribution of each module. Compared with common models, the CirnetamorNet model performs well, with training losses as low as 1.4589 and mean square error of only 0.1856. Its temperature prediction accuracy of 0.3°C exceeds that of many advanced models. Ablation experiments show that the removal of any key module of the model will lead to performance degradation, which proves that the collaboration of all modules is significant for improving the performance of the model. The proposed CirnetamorNet model exhibits exceptional performance in noninvasive thermometry for microwave thermotherapy. It offers a novel approach to multi-feature data fusion in the medical field and holds significant practical application value.

A myocardial reorientation method based on feature point detection for quantitative analysis of PET myocardial perfusion imaging.

Shang F, Huo L, Gong T, Wang P, Shi X, Tang X, Liu S

pubmed logopapersMay 8 2025
Reorienting cardiac positron emission tomography (PET) images to the transaxial plane is essential for cardiac PET image analysis. This study aims to design a convolutional neural network (CNN) for automatic reorientation and evaluate its generalizability. An artificial intelligence (AI) method integrating U-Net and the differentiable spatial to numeric transform module (DSNT-U) was proposed to automatically position three feature points (P<sub>apex</sub>, P<sub>base</sub>, and P<sub>RV</sub>), with these three points manually located by an experienced radiologist as the reference standard (RS). A second radiologist performed manual location for reproducibility evaluation. The DSNT-U, initially trained and tested on a [<sup>11</sup>C]acetate dataset (training/testing: 40/17), was further compared with a CNN-spatial transformer network (CNN-STN). The network fine-tuned with 4 subjects was tested on a [<sup>13</sup>N]ammonia dataset (n = 30). The performance of the DSNT-U was evaluated in terms of coordinates, volume, and quantitative indexes (pharmacokinetic parameters and total perfusion deficit). The proposed DSNT-U successfully achieved automatic myocardial reorientation for both [<sup>11</sup>C]acetate and [<sup>13</sup>N]ammonia datasets. For the former dataset, the intraclass correlation coefficients (ICCs) between the coordinates predicted by the DSNT-U and the RS exceeded 0.876. The average normalized mean squared error (NMSE) between the short-axis (SA) images obtained through DSNT-U-based reorientation and the reference SA images was 0.051 ± 0.043. For pharmacokinetic parameters, the R² between the DSNT-U and the RS was larger than 0.968. Compared with the CNN-STN, the DSNT-U demonstrated a higher ICC between the estimated rigid transformation parameters and the RS. After fine-tuning on the [<sup>13</sup>N]ammonia dataset, the average NMSE between the SA images reoriented by the DSNT-U and the reference SA images was 0.056 ± 0.046. The ICC between the total perfusion deficit (TPD) values computed from DSNT-U-derived images and the reference values was 0.981. Furthermore, no significant differences were observed in the performance of the DSNT-U prediction among subjects with different genders or varying myocardial perfusion defect (MPD) statuses. The proposed DSNT-U can accurately position P<sub>apex</sub>, P<sub>base</sub>, and P<sub>RV</sub> on the [<sup>11</sup>C]acetate dataset. After fine-tuning, the positioning model can be applied to the [<sup>13</sup>N]ammonia perfusion dataset, demonstrating good generalization performance. This method can adapt to data of different genders (with or without MPD) and different tracers, displaying the potential to replace manual operations.

A diffusion-stimulated CT-US registration model with self-supervised learning and synthetic-to-real domain adaptation.

Li S, Jia B, Huang W, Zhang X, Zhou W, Wang C, Teng G

pubmed logopapersMay 8 2025
In abdominal interventional procedures, achieving precise registration of 2D ultrasound (US) frames with 3D computed tomography (CT) scans presents a significant challenge. Traditional tracking methods often rely on high-precision sensors, which can be prohibitively expensive. Furthermore, the clinical need for real-time registration with a broad capture range frequently exceeds the performance of standard image-based optimization techniques. Current automatic registration methods that utilize deep learning are either heavily reliant on manual annotations for training or struggle to effectively bridge the gap between different imaging domains. To address these challenges, we propose a novel diffusion-stimulated CT-US registration model. This model harnesses the physical diffusion properties of US to generate synthetic US images from preoperative CT data. Additionally, we introduce a synthetic-to-real domain adaptation strategy using a diffusion model to mitigate the discrepancies between real and synthetic US images. A dual-stream self-supervised regression neural network, trained on these synthetic images, is then used to estimate the pose within the CT space. The effectiveness of our proposed approach is verified through validation using US and CT scans from a dual-modality human abdominal phantom. The results of our experiments confirm that our method can accurately initialize the US image pose within an acceptable range of error and subsequently refine it to achieve precise alignment. This enables real-time, tracker-independent, and robust rigid registration of CT and US images.

FF-PNet: A Pyramid Network Based on Feature and Field for Brain Image Registration

Ying Zhang, Shuai Guo, Chenxi Sun, Yuchen Zhu, Jinhai Xiang

arxiv logopreprintMay 8 2025
In recent years, deformable medical image registration techniques have made significant progress. However, existing models still lack efficiency in parallel extraction of coarse and fine-grained features. To address this, we construct a new pyramid registration network based on feature and deformation field (FF-PNet). For coarse-grained feature extraction, we design a Residual Feature Fusion Module (RFFM), for fine-grained image deformation, we propose a Residual Deformation Field Fusion Module (RDFFM). Through the parallel operation of these two modules, the model can effectively handle complex image deformations. It is worth emphasizing that the encoding stage of FF-PNet only employs traditional convolutional neural networks without any attention mechanisms or multilayer perceptrons, yet it still achieves remarkable improvements in registration accuracy, fully demonstrating the superior feature decoding capabilities of RFFM and RDFFM. We conducted extensive experiments on the LPBA and OASIS datasets. The results show our network consistently outperforms popular methods in metrics like the Dice Similarity Coefficient.
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