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Are Diffusion Models Effective Good Feature Extractors for MRI Discriminative Tasks?

Li B, Sun Z, Li C, Kamagata K, Andica C, Uchida W, Takabayashi K, Guo S, Zou R, Aoki S, Tanaka T, Zhao Q

pubmed logopapersMay 8 2025
Diffusion models (DMs) excel in pixel-level and spatial tasks and are proven feature extractors for 2D image discriminative tasks when pretrained. However, their capabilities in 3D MRI discriminative tasks remain largely untapped. This study seeks to assess the effectiveness of DMs in this underexplored area. We use 59830 T1-weighted MR images (T1WIs) from the extensive, yet unlabeled, UK Biobank dataset. Additionally, we apply 369 T1WIs from the BraTS2020 dataset specifically for brain tumor classification, and 421 T1WIs from the ADNI1 dataset for the diagnosis of Alzheimer's disease. Firstly, a high-performing denoising diffusion probabilistic model (DDPM) with a U-Net backbone is pretrained on the UK Biobank, then fine-tuned on the BraTS2020 and ADNI1 datasets. Afterward, we assess its feature representation capabilities for discriminative tasks using linear probes. Finally, we accordingly introduce a novel fusion module, named CATS, that enhances the U-Net representations, thereby improving performance on discriminative tasks. Our DDPM produces synthetic images of high quality that match the distribution of the raw datasets. Subsequent analysis reveals that DDPM features extracted from middle blocks and smaller timesteps are of high quality. Leveraging these features, the CATS module, with just 1.7M additional parameters, achieved average classification scores of 0.7704 and 0.9217 on the BraTS2020 and ADNI1 datasets, demonstrating competitive performance with that of the representations extracted from the transferred DDPM model, as well as the 33.23M parameters ResNet18 trained from scratch. We have found that pretraining a DM on a large-scale dataset and then fine-tuning it on limited data from discriminative datasets is a viable approach for MRI data. With these well-performing DMs, we show that they excel not just in generation tasks but also as feature extractors when combined with our proposed CATS module.

Deep learning approach based on a patch residual for pediatric supracondylar subtle fracture detection.

Ye Q, Wang Z, Lou Y, Yang Y, Hou J, Liu Z, Liu W, Li J

pubmed logopapersMay 8 2025
Supracondylar humerus fractures in children are among the most common elbow fractures in pediatrics. However, their diagnosis can be particularly challenging due to the anatomical characteristics and imaging features of the pediatric skeleton. In recent years, convolutional neural networks (CNNs) have achieved notable success in medical image analysis, though their performance typically relies on large-scale, high-quality labeled datasets. Unfortunately, labeled samples for pediatric supracondylar fractures are scarce and difficult to obtain. To address this issue, this paper introduces a deep learning-based multi-scale patch residual network (MPR) for the automatic detection and localization of subtle pediatric supracondylar fractures. The MPR framework combines a CNN for automatic feature extraction with a multi-scale generative adversarial network to model skeletal integrity using healthy samples. By leveraging healthy images to learn the normal skeletal distribution, the approach reduces the dependency on labeled fracture data and effectively addresses the challenges posed by limited pediatric datasets. Datasets from two different hospitals were used, with data augmentation techniques applied during both training and validation. On an independent test set, the proposed model achieves an accuracy of 90.5%, with 89% sensitivity, 92% specificity, and an F1 score of 0.906-outperforming the diagnostic accuracy of emergency medicine physicians and approaching that of pediatric radiologists. Furthermore, the model demonstrates a fast inference speed of 1.1 s per sheet, underscoring its substantial potential for clinical application.

A myocardial reorientation method based on feature point detection for quantitative analysis of PET myocardial perfusion imaging.

Shang F, Huo L, Gong T, Wang P, Shi X, Tang X, Liu S

pubmed logopapersMay 8 2025
Reorienting cardiac positron emission tomography (PET) images to the transaxial plane is essential for cardiac PET image analysis. This study aims to design a convolutional neural network (CNN) for automatic reorientation and evaluate its generalizability. An artificial intelligence (AI) method integrating U-Net and the differentiable spatial to numeric transform module (DSNT-U) was proposed to automatically position three feature points (P<sub>apex</sub>, P<sub>base</sub>, and P<sub>RV</sub>), with these three points manually located by an experienced radiologist as the reference standard (RS). A second radiologist performed manual location for reproducibility evaluation. The DSNT-U, initially trained and tested on a [<sup>11</sup>C]acetate dataset (training/testing: 40/17), was further compared with a CNN-spatial transformer network (CNN-STN). The network fine-tuned with 4 subjects was tested on a [<sup>13</sup>N]ammonia dataset (n = 30). The performance of the DSNT-U was evaluated in terms of coordinates, volume, and quantitative indexes (pharmacokinetic parameters and total perfusion deficit). The proposed DSNT-U successfully achieved automatic myocardial reorientation for both [<sup>11</sup>C]acetate and [<sup>13</sup>N]ammonia datasets. For the former dataset, the intraclass correlation coefficients (ICCs) between the coordinates predicted by the DSNT-U and the RS exceeded 0.876. The average normalized mean squared error (NMSE) between the short-axis (SA) images obtained through DSNT-U-based reorientation and the reference SA images was 0.051 ± 0.043. For pharmacokinetic parameters, the R² between the DSNT-U and the RS was larger than 0.968. Compared with the CNN-STN, the DSNT-U demonstrated a higher ICC between the estimated rigid transformation parameters and the RS. After fine-tuning on the [<sup>13</sup>N]ammonia dataset, the average NMSE between the SA images reoriented by the DSNT-U and the reference SA images was 0.056 ± 0.046. The ICC between the total perfusion deficit (TPD) values computed from DSNT-U-derived images and the reference values was 0.981. Furthermore, no significant differences were observed in the performance of the DSNT-U prediction among subjects with different genders or varying myocardial perfusion defect (MPD) statuses. The proposed DSNT-U can accurately position P<sub>apex</sub>, P<sub>base</sub>, and P<sub>RV</sub> on the [<sup>11</sup>C]acetate dataset. After fine-tuning, the positioning model can be applied to the [<sup>13</sup>N]ammonia perfusion dataset, demonstrating good generalization performance. This method can adapt to data of different genders (with or without MPD) and different tracers, displaying the potential to replace manual operations.

Impact of spectrum bias on deep learning-based stroke MRI analysis.

Krag CH, Müller FC, Gandrup KL, Plesner LL, Sagar MV, Andersen MB, Nielsen M, Kruuse C, Boesen M

pubmed logopapersMay 8 2025
To evaluate spectrum bias in stroke MRI analysis by excluding cases with uncertain acute ischemic lesions (AIL) and examining patient, imaging, and lesion factors associated with these cases. This single-center retrospective observational study included adults with brain MRIs for suspected stroke between January 2020 and April 2022. Diagnostic uncertain AIL were identified through reader disagreement or low certainty grading by a radiology resident, a neuroradiologist, and the original radiology report consisting of various neuroradiologists. A commercially available deep learning tool analyzing brain MRIs for AIL was evaluated to assess the impact of excluding uncertain cases on diagnostic odds ratios. Patient-related, MRI acquisition-related, and lesion-related factors were analyzed using the Wilcoxon rank sum test, χ2 test, and multiple logistic regression. The study was approved by the National Committee on Health Research Ethics. In 989 patients (median age 73 (IQR: 59-80), 53% female), certain AIL were found in 374 (38%), uncertain AIL in 63 (6%), and no AIL in 552 (56%). Excluding uncertain cases led to a four-fold increase in the diagnostic odds ratio (from 68 to 278), while a simulated case-control design resulted in a six-fold increase compared to the full disease spectrum (from 68 to 431). Independent factors associated with uncertain AIL were MRI artifacts, smaller lesion size, older lesion age, and infratentorial location. Excluding uncertain cases leads to a four-fold overestimation of the diagnostic odds ratio. MRI artifacts, smaller lesion size, infratentorial location, and older lesion age are associated with uncertain AIL and should be accounted for in validation studies.

Early budget impact analysis of AI to support the review of radiographic examinations for suspected fractures in NHS emergency departments (ED).

Gregory L, Boodhna T, Storey M, Shelmerdine S, Novak A, Lowe D, Harvey H

pubmed logopapersMay 7 2025
To develop an early budget impact analysis of and inform future research on the national adoption of a commercially available AI application to support clinicians reviewing radiographs for suspected fractures across NHS emergency departments in England. A decision tree framework was coded to assess a change in outcomes for suspected fractures in adults when AI fracture detection was integrated into clinical workflow over a 1-year time horizon. Standard of care was the comparator scenario and the ground truth reference cases were characterised by radiology report findings. The effect of AI on assisting ED clinicians when detecting fractures was sourced from US literature. Data on resource use conditioned on the correct identification of a fracture in the ED was extracted from a London NHS trust. Sensitivity analysis was conducted to account for the influence of parameter uncertainty on results. In one year, an estimated 658,564 radiographs were performed in emergency departments across England for suspected wrist, ankle or hip fractures. The number of patients returning to the ED with a missed fracture was reduced by 21,674 cases and a reduction of 20, 916 unnecessary referrals to fracture clinics. The cost of current practice was estimated at £66,646,542 and £63,012,150 with the integration of AI. Overall, generating a return on investment of £3,634,392 to the NHS. The adoption of AI in EDs across England has the potential to generate cost savings. However, additional evidence on radiograph review accuracy and subsequent resource use is required to further demonstrate this.

MRI-based multimodal AI model enables prediction of recurrence risk and adjuvant therapy in breast cancer.

Yu Y, Ren W, Mao L, Ouyang W, Hu Q, Yao Q, Tan Y, He Z, Ban X, Hu H, Lin R, Wang Z, Chen Y, Wu Z, Chen K, Ouyang J, Li T, Zhang Z, Liu G, Chen X, Li Z, Duan X, Wang J, Yao H

pubmed logopapersMay 7 2025
Timely intervention and improved prognosis for breast cancer patients rely on early metastasis risk detection and accurate treatment predictions. This study introduces an advanced multimodal MRI and AI-driven 3D deep learning model, termed the 3D-MMR-model, designed to predict recurrence risk in non-metastatic breast cancer patients. We conducted a multicenter study involving 1199 non-metastatic breast cancer patients from four institutions in China, with comprehensive MRI and clinical data retrospectively collected. Our model employed multimodal-data fusion, utilizing contrast-enhanced T1-weighted imaging (T1 + C) and T2-weighted imaging (T2WI) volumes, processed through a modified 3D-UNet for tumor segmentation and a DenseNet121-based architecture for disease-free survival (DFS) prediction. Additionally, we performed RNA-seq analysis to delve further into the relationship between concentrated hotspots within the tumor region and the tumor microenvironment. The 3D-MR-model demonstrated superior predictive performance, with time-dependent ROC analysis yielding AUC values of 0.90, 0.89, and 0.88 for 2-, 3-, and 4-year DFS predictions, respectively, in the training cohort. External validation cohorts corroborated these findings, highlighting the model's robustness across diverse clinical settings. Integration of clinicopathological features further enhanced the model's accuracy, with a multimodal approach significantly improving risk stratification and decision-making in clinical practice. Visualization techniques provided insights into the decision-making process, correlating predictions with tumor microenvironment characteristics. In summary, the 3D-MMR-model represents a significant advancement in breast cancer prognosis, combining cutting-edge AI technology with multimodal imaging to deliver precise and clinically relevant predictions of recurrence risk. This innovative approach holds promise for enhancing patient outcomes and guiding individualized treatment plans in breast cancer care.

Artificial Intelligence based radiomic model in Craniopharyngiomas: A Systematic Review and Meta-Analysis on Diagnosis, Segmentation, and Classification.

Mohammadzadeh I, Hajikarimloo B, Niroomand B, Faizi N, Faizi N, Habibi MA, Mohammadzadeh S, Soltani R

pubmed logopapersMay 7 2025
Craniopharyngiomas (CPs) are rare, benign brain tumors originating from Rathke's pouch remnants, typically located in the sellar/parasellar region. Accurate differentiation is crucial due to varying prognoses, with ACPs having higher recurrence and worse outcomes. MRI struggles with overlapping features, complicating diagnosis. this study evaluates the role of Artificial Intelligence (AI) in diagnosing, segmenting, and classifying CPs, emphasizing its potential to improve clinical decision-making, particularly for radiologists and neurosurgeons. This systematic review and meta-analysis assess AI applications in diagnosing, segmenting, and classifying on CPs patients. a comprehensive search was conducted across PubMed, Scopus, Embase and Web of Science for studies employing AI models in patients with CP. Performance metrics such as sensitivity, specificity, accuracy, and area under the curve (AUC) were extracted and synthesized. Eleven studies involving 1916 patients were included in the analysis. The pooled results revealed a sensitivity of 0.740 (95% CI: 0.673-0.808), specificity of 0.813 (95% CI: 0.729-0.898), and accuracy of 0.746 (95% CI: 0.679-0.813). The area under the curve (AUC) for diagnosis was 0.793 (95% CI: 0.719-0.866), and for classification, it was 0.899 (95% CI: 0.846-0.951). The sensitivity for segmentation was found to be 0.755 (95% CI: 0.704-0.805). AI-based models show strong potential in enhancing the diagnostic accuracy and clinical decision-making process for CPs. These findings support the use of AI tools for more reliable preoperative assessment, leading to better treatment planning and patient outcomes. Further research with larger datasets is needed to optimize and validate AI applications in clinical practice.

Impact of the recent advances in coronary artery disease imaging on pilot medical certification and aviation safety: current state and future perspective.

Benjamin MM, Rabbat MG, Park W, Benjamin M, Davenport E

pubmed logopapersMay 7 2025
Coronary artery disease (CAD) is highly prevalent among pilots due to the nature of their lifestyle, and occupational stresses. CAD is one the most common conditions affecting pilots' medical certification and is frequently nondisclosed by pilots fearing the loss of their certification. Traditional screening methods, such as resting electrocardiograms (EKGs) and functional stress tests, have limitations, especially in detecting non-obstructive CAD. Recent advances in cardiac imaging are challenging the current paradigms of CAD screening and risk assessment protocols, offering tools uniquely suited to address the occupational health challenges faced by pilots. Coronary artery calcium scoring (CACS) has proven valuable in refining risk stratification in asymptomatic individuals. Coronary computed tomography angiography (CCTA), is being increasingly adopted as a superior tool for ruling out CAD in symptomatic individuals, assessing plaque burden as well as morphologically identifying vulnerable plaque. CT-derived fractional flow reserve (CT-FFR) adds a physiologic component to the anatomical prowess of CCTA. Cardiac magnetic resonance imaging (CMR) is now used as a prognosticating tool following a coronary event as well as a stress testing modality. Investigational technologies like pericoronary fat attenuation and artificial intelligence (AI)-enabled plaque quantification hold the promise of enhancing diagnostic accuracy and risk stratification. This review highlights the interplay between occupational demands, regulatory considerations, and the limitations of the traditional modalities for pilot CAD screening and surveillance. We also discuss the potential role of the recent advances in cardiac imaging in optimizing pilot health and flight safety.

Potential of artificial intelligence for radiation dose reduction in computed tomography -A scoping review.

Bani-Ahmad M, England A, McLaughlin L, Hadi YH, McEntee M

pubmed logopapersMay 7 2025
Artificial intelligence (AI) is now transforming medical imaging, with extensive ramifications for nearly every aspect of diagnostic imaging, including computed tomography (CT). This current work aims to review, evaluate, and summarise the role of AI in radiation dose optimisation across three fundamental domains in CT: patient positioning, scan range determination, and image reconstruction. A comprehensive scoping review of the literature was performed. Electronic databases including Scopus, Ovid, EBSCOhost and PubMed were searched between January 2018 and December 2024. Relevant articles were identified from their titles had their abstracts evaluated, and those deemed relevant had their full text reviewed. Extracted data from selected studies included the application of AI, radiation dose, anatomical part, and any relevant evaluation metrics based on the CT parameter in which AI is applied. 90 articles met the selection criteria. Included studies evaluated the performance of AI for dose optimisation through patient positioning, scan range determination, and reconstruction across various CT scans, including the abdomen, chest, head, neck, and pelvis, as well as CT angiography. A concise overview of the present state of AI in these three domains, emphasising benefits, limitations, and impact on the transformation of dose reduction in CT scanning, is provided. AI methods can help minimise positioning offsets and over-scanning caused by manual errors and helped to overcome the limitation associated with low-dose CT settings through deep learning image reconstruction algorithms. Further clinical integration of AI will continue to allow for improvements in optimising CT scan protocols and radiation dose. This review underscores the significance of AI in optimizing radiation doses in CT imaging, focusing on three key areas: patient positioning, scan range determination, and image reconstruction.

Hybrid method for automatic initialization and segmentation of ventricular on large-scale cardiovascular magnetic resonance images.

Pan N, Li Z, Xu C, Gao J, Hu H

pubmed logopapersMay 7 2025
Cardiovascular diseases are the number one cause of death globally, making cardiac magnetic resonance image segmentation a popular research topic. Existing schemas relying on manual user interaction or semi-automatic segmentation are infeasible when dealing thousands of cardiac MRI studies. Thus, we proposed a full automatic and robust algorithm for large-scale cardiac MRI segmentation by combining the advantages of deep learning localization and 3D-ASM restriction. The proposed method comprises several key techniques: 1) a hybrid network integrating CNNs and Transformer as a encoder with the EFG (Edge feature guidance) module (named as CTr-HNs) to localize the target regions of the cardiac on MRI images, 2) initial shape acquisition by alignment of coarse segmentation contours to the initial surface model of 3D-ASM, 3) refinement of the initial shape to cover all slices of MRI in the short axis by complex transformation. The datasets used are from the UK BioBank and the CAP (Cardiac Atlas Project). In cardiac coarse segmentation experiments on MR images, Dice coefficients (Dice), mean contour distances (MCD), and mean Hausdorff distances (HD95) are used to evaluate segmentation performance. In SPASM experiments, Point-to-surface (P2S) distances, Dice score are compared between automatic results and ground truth. The CTr-HNs from our proposed method achieves Dice coefficients (Dice), mean contour distances (MCD), and mean Hausdorff distances (HD95) of 0.95, 0.10 and 1.54 for the LV segmentation respectively, 0.88, 0.13 and 1.94 for the LV myocardium segmentation, and 0.91, 0.24 and 3.25 for the RV segmentation. The overall P2S errors from our proposed schema is 1.45 mm. For endocardium and epicardium, the Dice scores are 0.87 and 0.91 respectively. Our experimental results show that the proposed schema can automatically analyze large-scale quantification from population cardiac images with robustness and accuracy.
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