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Future prospects of deep learning in esophageal cancer diagnosis and clinical decision support (Review).

Lin A, Song L, Wang Y, Yan K, Tang H

pubmed logopapersJun 1 2025
Esophageal cancer (EC) is one of the leading causes of cancer-related mortality worldwide, still faces significant challenges in early diagnosis and prognosis. Early EC lesions often present subtle symptoms and current diagnostic methods are limited in accuracy due to tumor heterogeneity, lesion morphology and variable image quality. These limitations are particularly prominent in the early detection of precancerous lesions such as Barrett's esophagus. Traditional diagnostic approaches, such as endoscopic examination, pathological analysis and computed tomography, require improvements in diagnostic precision and staging accuracy. Deep learning (DL), a key branch of artificial intelligence, shows great promise in improving the detection of early EC lesions, distinguishing benign from malignant lesions and aiding cancer staging and prognosis. However, challenges remain, including image quality variability, insufficient data annotation and limited generalization. The present review summarized recent advances in the application of DL to medical images obtained through various imaging techniques for the diagnosis of EC at different stages. It assesses the role of DL in tumor pathology, prognosis prediction and clinical decision support, highlighting its advantages in EC diagnosis and prognosis evaluation. Finally, it provided an objective analysis of the challenges currently facing the field and prospects for future applications.

FedSynthCT-Brain: A federated learning framework for multi-institutional brain MRI-to-CT synthesis.

Raggio CB, Zabaleta MK, Skupien N, Blanck O, Cicone F, Cascini GL, Zaffino P, Migliorelli L, Spadea MF

pubmed logopapersJun 1 2025
The generation of Synthetic Computed Tomography (sCT) images has become a pivotal methodology in modern clinical practice, particularly in the context of Radiotherapy (RT) treatment planning. The use of sCT enables the calculation of doses, pushing towards Magnetic Resonance Imaging (MRI) guided radiotherapy treatments. Moreover, with the introduction of MRI-Positron Emission Tomography (PET) hybrid scanners, the derivation of sCT from MRI can improve the attenuation correction of PET images. Deep learning methods for MRI-to-sCT have shown promising results, but their reliance on single-centre training dataset limits generalisation capabilities to diverse clinical settings. Moreover, creating centralised multi-centre datasets may pose privacy concerns. To address the aforementioned issues, we introduced FedSynthCT-Brain, an approach based on the Federated Learning (FL) paradigm for MRI-to-sCT in brain imaging. This is among the first applications of FL for MRI-to-sCT, employing a cross-silo horizontal FL approach that allows multiple centres to collaboratively train a U-Net-based deep learning model. We validated our method using real multicentre data from four European and American centres, simulating heterogeneous scanner types and acquisition modalities, and tested its performance on an independent dataset from a centre outside the federation. In the case of the unseen centre, the federated model achieved a median Mean Absolute Error (MAE) of 102.0 HU across 23 patients, with an interquartile range of 96.7-110.5 HU. The median (interquartile range) for the Structural Similarity Index (SSIM) and the Peak Signal to Noise Ratio (PNSR) were 0.89 (0.86-0.89) and 26.58 (25.52-27.42), respectively. The analysis of the results showed acceptable performances of the federated approach, thus highlighting the potential of FL to enhance MRI-to-sCT to improve generalisability and advancing safe and equitable clinical applications while fostering collaboration and preserving data privacy.

Atten-Nonlocal Unet: Attention and Non-local Unet for medical image segmentation.

Jia X, Wang W, Zhang M, Zhao B

pubmed logopapersJun 1 2025
The convolutional neural network(CNN)-based models have emerged as the predominant approach for medical image segmentation due to their effective inductive bias. However, their limitation lies in the lack of long-range information. In this study, we propose the Atten-Nonlocal Unet model that integrates CNN and transformer to overcome this limitation and precisely capture global context in 2D features. Specifically, we utilize the BCSM attention module and the Cross Non-local module to enhance feature representation, thereby improving the segmentation accuracy. Experimental results on the Synapse, ACDC, and AVT datasets show that Atten-Nonlocal Unet achieves DSC scores of 84.15%, 91.57%, and 86.94% respectively, and has 95% HD of 15.17, 1.16, and 4.78 correspondingly. Compared to the existing methods for medical image segmentation, the proposed method demonstrates superior segmentation performance, ensuring high accuracy in segmenting large organs while improving segmentation for small organs.

BenchXAI: Comprehensive benchmarking of post-hoc explainable AI methods on multi-modal biomedical data.

Metsch JM, Hauschild AC

pubmed logopapersJun 1 2025
The increasing digitalization of multi-modal data in medicine and novel artificial intelligence (AI) algorithms opens up a large number of opportunities for predictive models. In particular, deep learning models show great performance in the medical field. A major limitation of such powerful but complex models originates from their 'black-box' nature. Recently, a variety of explainable AI (XAI) methods have been introduced to address this lack of transparency and trust in medical AI. However, the majority of such methods have solely been evaluated on single data modalities. Meanwhile, with the increasing number of XAI methods, integrative XAI frameworks and benchmarks are essential to compare their performance on different tasks. For that reason, we developed BenchXAI, a novel XAI benchmarking package supporting comprehensive evaluation of fifteen XAI methods, investigating their robustness, suitability, and limitations in biomedical data. We employed BenchXAI to validate these methods in three common biomedical tasks, namely clinical data, medical image and signal data, and biomolecular data. Our newly designed sample-wise normalization approach for post-hoc XAI methods enables the statistical evaluation and visualization of performance and robustness. We found that the XAI methods Integrated Gradients, DeepLift, DeepLiftShap, and GradientShap performed well over all three tasks, while methods like Deconvolution, Guided Backpropagation, and LRP-α1-β0 struggled for some tasks. With acts such as the EU AI Act the application of XAI in the biomedical domain becomes more and more essential. Our evaluation study represents a first step towards verifying the suitability of different XAI methods for various medical domains.

Evaluation of MRI anatomy in machine learning predictive models to assess hydrogel spacer benefit for prostate cancer patients.

Bush M, Jones S, Hargrave C

pubmed logopapersJun 1 2025
Hydrogel spacers (HS) are designed to minimise the radiation doses to the rectum in prostate cancer radiation therapy (RT) by creating a physical gap between the rectum and the target treatment volume inclusive of the prostate and seminal vesicles (SV). This study aims to determine the feasibility of incorporating diagnostic MRI (dMRI) information in statistical machine learning (SML) models developed with planning CT (pCT) anatomy for dose and rectal toxicity prediction. The SML models aim to support HS insertion decision-making prior to RT planning procedures. Regions of interest (ROIs) were retrospectively contoured on the pCT and registered dMRI scans for 20 patients. ROI Dice and Hausdorff distance (HD) comparison metrics were calculated. The ROI and patient clinical risk factors (CRFs) variables were inputted into three SML models and then pCT and dMRI-based dose and toxicity model performance compared through confusion matrices, AUC curves, accuracy performance metric results and observed patient outcomes. Average Dice values comparing dMRI and pCT ROIs were 0.81, 0.47 and 0.71 for the prostate, SV, and rectum respectively. Average Hausdorff distances were 2.15, 2.75 and 2.75 mm for the prostate, SV, and rectum respectively. The average accuracy metric across all models was 0.83 when using dMRI ROIs and 0.85 when using pCT ROIs. Differences between pCT and dMRI anatomical ROI variables did not impact SML model performance in this study, demonstrating the feasibility of using dMRI images. Due to the limited sample size further training of the predictive models including dMRI anatomy is recommended.

Boosting polyp screening with improved point-teacher weakly semi-supervised.

Du X, Zhang X, Chen J, Li L

pubmed logopapersJun 1 2025
Polyps, like a silent time bomb in the gut, are always lurking and can explode into deadly colorectal cancer at any time. Many methods are attempted to maximize the early detection of colon polyps by screening, however, there are still face some challenges: (i) the scarcity of per-pixel annotation data and clinical features such as the blurred boundary and low contrast of polyps result in poor performance. (ii) existing weakly semi-supervised methods directly using pseudo-labels to supervise student tend to ignore the value brought by intermediate features in the teacher. To adapt the point-prompt teacher model to the challenging scenarios of complex medical images and limited annotation data, we creatively leverage the diverse inductive biases of CNN and Transformer to extract robust and complementary representation of polyp features (boundary and context). At the same time, a novel designed teacher-student intermediate feature distillation method is introduced rather than just using pseudo-labels to guide student learning. Comprehensive experiments demonstrate that our proposed method effectively handles scenarios with limited annotations and exhibits good segmentation performance. All code is available at https://github.com/dxqllp/WSS-Polyp.

Generative adversarial networks in medical image reconstruction: A systematic literature review.

Hussain J, Båth M, Ivarsson J

pubmed logopapersJun 1 2025
Recent advancements in generative adversarial networks (GANs) have demonstrated substantial potential in medical image processing. Despite this progress, reconstructing images from incomplete data remains a challenge, impacting image quality. This systematic literature review explores the use of GANs in enhancing and reconstructing medical imaging data. A document survey of computing literature was conducted using the ACM Digital Library to identify relevant articles from journals and conference proceedings using keyword combinations, such as "generative adversarial networks or generative adversarial network," "medical image or medical imaging," and "image reconstruction." Across the reviewed articles, there were 122 datasets used in 175 instances, 89 top metrics employed 335 times, 10 different tasks with a total count of 173, 31 distinct organs featured in 119 instances, and 18 modalities utilized in 121 instances, collectively depicting significant utilization of GANs in medical imaging. The adaptability and efficacy of GANs were showcased across diverse medical tasks, organs, and modalities, utilizing top public as well as private/synthetic datasets for disease diagnosis, including the identification of conditions like cancer in different anatomical regions. The study emphasized GAN's increasing integration and adaptability in diverse radiology modalities, showcasing their transformative impact on diagnostic techniques, including cross-modality tasks. The intricate interplay between network size, batch size, and loss function refinement significantly impacts GAN's performance, although challenges in training persist. The study underscores GANs as dynamic tools shaping medical imaging, contributing significantly to image quality, training methodologies, and overall medical advancements, positioning them as substantial components driving medical advancements.

GAN-based synthetic FDG PET images from T1 brain MRI can serve to improve performance of deep unsupervised anomaly detection models.

Zotova D, Pinon N, Trombetta R, Bouet R, Jung J, Lartizien C

pubmed logopapersJun 1 2025
Research in the cross-modal medical image translation domain has been very productive over the past few years in tackling the scarce availability of large curated multi-modality datasets with the promising performance of GAN-based architectures. However, only a few of these studies assessed task-based related performance of these synthetic data, especially for the training of deep models. We design and compare different GAN-based frameworks for generating synthetic brain[18F]fluorodeoxyglucose (FDG) PET images from T1 weighted MRI data. We first perform standard qualitative and quantitative visual quality evaluation. Then, we explore further impact of using these fake PET data in the training of a deep unsupervised anomaly detection (UAD) model designed to detect subtle epilepsy lesions in T1 MRI and FDG PET images. We introduce novel diagnostic task-oriented quality metrics of the synthetic FDG PET data tailored to our unsupervised detection task, then use these fake data to train a use case UAD model combining a deep representation learning based on siamese autoencoders with a OC-SVM density support estimation model. This model is trained on normal subjects only and allows the detection of any variation from the pattern of the normal population. We compare the detection performance of models trained on 35 paired real MR T1 of normal subjects paired either on 35 true PET images or on 35 synthetic PET images generated from the best performing generative models. Performance analysis is conducted on 17 exams of epilepsy patients undergoing surgery. The best performing GAN-based models allow generating realistic fake PET images of control subject with SSIM and PSNR values around 0.9 and 23.8, respectively and in distribution (ID) with regard to the true control dataset. The best UAD model trained on these synthetic normative PET data allows reaching 74% sensitivity. Our results confirm that GAN-based models are the best suited for MR T1 to FDG PET translation, outperforming transformer or diffusion models. We also demonstrate the diagnostic value of these synthetic data for the training of UAD models and evaluation on clinical exams of epilepsy patients. Our code and the normative image dataset are available.

Combating Medical Label Noise through more precise partition-correction and progressive hard-enhanced learning.

Zhang S, Chu S, Qiang Y, Zhao J, Wang Y, Wei X

pubmed logopapersJun 1 2025
Computer-aided diagnosis systems based on deep neural networks heavily rely on datasets with high-quality labels. However, manual annotation for lesion diagnosis relies on image features, often requiring professional experience and complex image analysis process. This inevitably introduces noisy labels, which can misguide the training of classification models. Our goal is to design an effective method to address the challenges posed by label noise in medical images. we propose a novel noise-tolerant medical image classification framework consisting of two phases: fore-training correction and progressive hard-sample enhanced learning. In the first phase, we design a dual-branch sample partition detection scheme that effectively classifies each instance into one of three subsets: clean, hard, or noisy. Simultaneously, we propose a hard-sample label refinement strategy based on class prototypes with confidence-perception weighting and an effective joint correction method for noisy samples, enabling the acquisition of higher-quality training data. In the second phase, we design a progressive hard-sample reinforcement learning method to enhance the model's ability to learn discriminative feature representations. This approach accounts for sample difficulty and mitigates the effects of label noise in medical datasets. Our framework achieves an accuracy of 82.39% on the pneumoconiosis dataset collected by our laboratory. On a five-class skin disease dataset with six different levels of label noise (0, 0.05, 0.1, 0.2, 0.3, and 0.4), the average accuracy over the last ten epochs reaches 88.51%, 86.64%, 85.02%, 83.01%, 81.95%, 77.89%, respectively; For binary polyp classification under noise rates of 0.2, 0.3, and 0.4, the average accuracy over the last ten epochs is 97.90%, 93.77%, 89.33%, respectively. The effectiveness of our proposed framework is demonstrated through its performance on three challenging datasets with both real and synthetic noise. Experimental results further demonstrate the robustness of our method across varying noise rates.

Advanced image preprocessing and context-aware spatial decomposition for enhanced breast cancer segmentation.

Kalpana G, Deepa N, Dhinakaran D

pubmed logopapersJun 1 2025
The segmentation of breast cancer diagnosis and medical imaging contains issues such as noise, variation in contrast, and low resolutions which make it challenging to distinguish malignant sites. In this paper, we propose a new solution that integrates with AIPT (Advanced Image Preprocessing Techniques) and CASDN (Context-Aware Spatial Decomposition Network) to overcome these problems. The preprocessing pipeline apply bunch of methods including Adaptive Thresholding, Hierarchical Contrast Normalization, Contextual Feature Augmentation, Multi-Scale Region Enhancement, and Dynamic Histogram Equalization for image quality. These methods smooth edges, equalize the contrasting picture and inlay contextual details in a way which effectively eliminate the noise and make the images clearer and with fewer distortions. Experimental outcomes demonstrate its effectiveness by delivering a Dice Coefficient of 0.89, IoU of 0.85, and a Hausdorff Distance of 5.2 demonstrating its enhanced capability in segmenting significant tumor margins over other techniques. Furthermore, the use of the improved preprocessing pipeline benefits classification models with improved Convolutional Neural Networks having a classification accuracy of 85.3 % coupled with AUC-ROC of 0.90 which shows a significant enhancement from conventional techniques.•Enhanced segmentation accuracy with advanced preprocessing and CASDN, achieving superior performance metrics.•Robust multi-modality compatibility, ensuring effectiveness across mammograms, ultrasounds, and MRI scans.
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