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Advancing respiratory disease diagnosis: A deep learning and vision transformer-based approach with a novel X-ray dataset.

Alghadhban A, Ramadan RA, Alazmi M

pubmed logopapersJun 9 2025
With the increasing prevalence of respiratory diseases such as pneumonia and COVID-19, timely and accurate diagnosis is critical. This paper makes significant contributions to the field of respiratory disease classification by utilizing X-ray images and advanced machine learning techniques such as deep learning (DL) and Vision Transformers (ViT). First, the paper systematically reviews the current diagnostic methodologies, analyzing the recent advancement in DL and ViT techniques through a comprehensive analysis of the review articles published between 2017 and 2024, excluding short reviews and overviews. The review not only analyses the existing knowledge but also identifies the critical gaps in the field as well as the lack of diversity of the comprehensive and diverse datasets for training the machine learning models. To address such limitations, the paper extensively evaluates DL-based models on publicly available datasets, analyzing key performance metrics such as accuracy, precision, recall, and F1-score. Our evaluations reveal that the current datasets are mostly limited to the narrow subsets of pulmonary diseases, which might lead to some challenges, including overfitting, poor generalization, and reduced possibility of using advanced machine learning techniques in real-world applications. For instance, DL and ViT models require extensive data for effective learning. The primary contribution of this paper is not only the review of the most recent articles and surveys of respiratory diseases and DL models, including ViT, but also introduces a novel, diverse dataset comprising 7867 X-ray images from 5263 patients across three local hospitals, covering 49 distinct pulmonary diseases. The dataset is expected to enhance DL and ViT model training and improve the generalization of those models in various real-world medical image scenarios. By addressing the data scarcity issue, this paper paves the for more reliable and robust disease classification, improving clinical decision-making. Additionally, the article highlights the critical challenges that still need to be addressed, such as dataset bias and variations of X-ray image quality, as well as the need for further clinical validation. Furthermore, the study underscores the critical role of DL in medical diagnosis and highlights the necessity of comprehensive, well-annotated datasets to improve model robustness and clinical reliability. Through these contributions, the paper provides the basis and foundation of future research on respiratory disease diagnosis using AI-driven methodologies. Although the paper tries to cover all the work done between 2017 and 2024, this research might have some limitations of this research, including the review period before 2017 might have foundational work. At the same time, the rapid development of AI might make the earlier methods less relevant.

Deep learning-based post-hoc noise reduction improves quarter-radiation-dose coronary CT angiography.

Morikawa T, Nishii T, Tanabe Y, Yoshida K, Toshimori W, Fukuyama N, Toritani H, Suekuni H, Fukuda T, Kido T

pubmed logopapersJun 9 2025
To evaluate the impact of deep learning-based post-hoc noise reduction (DLNR) on image quality, coronary artery disease reporting and data system (CAD-RADS) assessment, and diagnostic performance in quarter-dose versus full-dose coronary CT angiography (CCTA) on external datasets. We retrospectively reviewed 221 patients who underwent retrospective electrocardiogram-gated CCTA in 2022-2023. Using dose modulation, either mid-diastole or end-systole was scanned at full dose depending on heart rates, and the other phase at quarter dose. Only patients with motion-free coronaries in both phases were included. Images were acquired using iterative reconstruction, and a residual dense network trained on external datasets denoised the quarter-dose images. Image quality was assessed by comparing noise levels using Tukey's test. Two radiologists independently assessed CAD-RADS, with agreement to full-dose images evaluated by Cohen's kappa. Diagnostic performance for significant stenosis referencing full-dose images was compared between quarter-dose and denoised images by the area under the receiver operating characteristic curve (AUC) using the DeLong test. Among 40 cases (age, 71 ± 7 years; 24 males), DLNR reduced noise from 37 to 18 HU (P < 0.001) in quarter-dose CCTA (full-dose images: 22 HU), and improved CAD-RADS agreement from moderate (0.60 [95 % CI: 0.41-0.78]) to excellent (0.82 [95 % CI: 0.66-0.94]). Denoised images demonstrated a superior AUC (0.97 [95 % CI: 0.95-1.00]) for diagnosing significant stenosis compared with original quarter-dose images (0.93 [95 % CI: 0.89-0.98]; P = 0.032). DLNR for quarter-dose CCTA significantly improved image quality, CAD-RADS agreement, and diagnostic performance for detecting significant stenosis referencing full-dose images.

Dose to circulating blood in intensity-modulated total body irradiation, total marrow irradiation, and total marrow and lymphoid irradiation.

Guo B, Cherian S, Murphy ES, Sauter CS, Sobecks RM, Rotz S, Hanna R, Scott JG, Xia P

pubmed logopapersJun 8 2025
Multi-isocentric intensity-modulated (IM) total body irradiation (TBI), total marrow irradiation (TMI), and total marrow and lymphoid irradiation (TMLI) are gaining popularity. A question arises on the impact of the interplay between blood circulation and dynamic delivery on blood dose. This study answers the question by introducing a new whole-body blood circulation modeling technique. A whole-body CT with intravenous contrast was used to develop the blood circulation model. Fifteen organs and tissues, heart chambers, and great vessels were segmented using a deep-learning-based auto-contouring software. The main blood vessels were segmented using an in-house algorithm. Blood density, velocity, time-to-heart, and perfusion distributions were derived for systole, diastole, and portal circulations and used to simulate trajectories of blood particles during delivery. With the same prescription of 12 Gy in 8 fractions, doses to circulating blood were calculated for three plans: (1) an IM-TBI plan prescribing uniform dose to the whole body while reducing lung and kidney doses; (2) a TMI plan treating all bones; and (3) a TMLI plan treating all bones, major lymph nodes, and spleen; TMI and TMLI plans were optimized to reduce doses to non-target tissue. Circulating blood received 1.57 ± 0.43 Gy, 1.04 ± 0.32 Gy, and 1.09 ± 0.32 Gy in one fraction and 12.60 ± 1.21 Gy, 8.34 ± 0.88 Gy, and 8.71 ± 0.92 Gy in 8 fractions in IM-TBI, TMI, and TMLI, respectively. The interplay effect of blood motion with IM delivery did not change the mean dose, but changed the dose heterogeneity of the circulating blood. Fractionation reduced the blood dose heterogeneity. A novel whole-body blood circulating model was developed based on patient-specific anatomy and realistic blood dynamics, concentration, and perfusion. Using the blood circulation model, we developed a dosimetry tool for circulating blood in IM-TBI, TMI, and TMLI.

Bi-regional and bi-phasic automated machine learning radiomics for defining metastasis to lesser curvature lymph node stations in gastric cancer.

Huang H, Wang S, Deng J, Ye Z, Li H, He B, Fang M, Zhang N, Liu J, Dong D, Liang H, Li G, Tian J, Hu Y

pubmed logopapersJun 8 2025
Lymph node metastasis (LNM) is the primary metastatic mode in gastric cancer (GC), with frequent occurrences in lesser curvature. This study aims to establish a radiomic model to predict the metastatic status of lymph nodes in the lesser curvature for GC. We retrospectively collected data from 939 gastric cancer patients who underwent gastrectomy and D2 lymphadenectomy across two centers. Both the primary lesion and the lesser curvature region were segmented as representative region of interests (ROIs). The combination of bi-regional and bi-phasic CT imaging features were used to build a hybrid radiomic model to predict LNM in the lesser curvature. And the model was validated internally and externally. Further, the potential generalization ability of the hybrid model was investigated in predicting the metastasis status in the supra-pancreatic area. The hybrid model yielded substantially higher performance with AUCs of 0.847 (95% CI, 0.770-0.924) and 0.833 (95% CI, 0.800-0.867) in the two independent test cohorts, compared to the single regional and phasic models. Additionally, the hybrid model achieved AUCs ranging from 0.678 to 0.761 in the prediction of LNM in supra-pancreatic area, showing the potential generalization performance. The CT imaging features of primary tumor and adjacent tissues are significantly associated with LNM. And our as-developed model showed great diagnostic performance and might be of great application in the individual treatment of GC.

Deep learning-based prospective slice tracking for continuous catheter visualization during MRI-guided cardiac catheterization.

Neofytou AP, Kowalik G, Vidya Shankar R, Kunze K, Moon T, Mellor N, Neji R, Razavi R, Pushparajah K, Roujol S

pubmed logopapersJun 8 2025
This proof-of-concept study introduces a novel, deep learning-based, parameter-free, automatic slice-tracking technique for continuous catheter tracking and visualization during MR-guided cardiac catheterization. The proposed sequence includes Calibration and Runtime modes. Initially, Calibration mode identifies the catheter tip's three-dimensional coordinates using a fixed stack of contiguous slices. A U-Net architecture with a ResNet-34 encoder is used to identify the catheter tip location. Once identified, the sequence then switches to Runtime mode, dynamically acquiring three contiguous slices automatically centered on the catheter tip. The catheter location is estimated from each Runtime stack using the same network and fed back to the sequence, enabling prospective slice tracking to keep the catheter in the central slice. If the catheter remains unidentified over several dynamics, the sequence reverts to Calibration mode. This artificial intelligence (AI)-based approach was evaluated prospectively in a three-dimensional-printed heart phantom and 3 patients undergoing MR-guided cardiac catheterization. This technique was also compared retrospectively in 2 patients with a previous non-AI automatic tracking method relying on operator-defined parameters. In the phantom study, the tracking framework achieved 100% accuracy/sensitivity/specificity in both modes. Across all patients, the average accuracy/sensitivity/specificity were 100 ± 0/100 ± 0/100 ± 0% (Calibration) and 98.4 ± 0.8/94.1 ± 2.9/100.0 ± 0.0% (Runtime). The parametric, non-AI technique and the proposed parameter-free AI-based framework yielded identical accuracy (100%) in Calibration mode and similar accuracy range in Runtime mode (Patients 1 and 2: 100%-97%, and 100%-98%, respectively). An AI-based prospective slice-tracking framework was developed for real-time, parameter-free, operator-independent, automatic tracking of gadolinium-filled balloon catheters. Its feasibility was successfully demonstrated in patients undergoing MRI-guided cardiac catheterization.

SMART MRS: A Simulated MEGA-PRESS ARTifacts toolbox for GABA-edited MRS.

Bugler H, Shamaei A, Souza R, Harris AD

pubmed logopapersJun 8 2025
To create a Python-based toolbox to simulate commonly occurring artifacts for single voxel gamma-aminobutyric acid (GABA)-edited MRS data. The toolbox was designed to maximize user flexibility and contains artifact, applied, input/output (I/O), and support functions. The artifact functions can produce spurious echoes, eddy currents, nuisance peaks, line broadening, baseline contamination, linear frequency drifts, and frequency and phase shift artifacts. Applied functions combine or apply specific parameter values to produce recognizable effects such as lipid peak and motion contamination. I/O and support functions provide additional functionality to accommodate different kinds of input data (MATLAB FID-A.mat files, NIfTI-MRS files), which vary by domain (time vs. frequency), MRS data type (e.g., edited vs. non-edited) and scale. A frequency and phase correction machine learning model experiment trained on corrupted simulated data and validated on in vivo data is shown to highlight the utility of our toolbox. Data simulated from the toolbox are complementary for research applications, as demonstrated by training a frequency and phase correction deep learning model that is applied to in vivo data containing artifacts. Visual assessment also confirms the resemblance of simulated artifacts compared to artifacts found in in vivo data. Our easy to install Python artifact simulated toolbox SMART_MRS is useful to enhance the diversity and quality of existing simulated edited-MRS data and is complementary to existing MRS simulation software.

MRI-mediated intelligent multimodal imaging system: from artificial intelligence to clinical imaging diagnosis.

Li Y, Wang J, Pan X, Shan Y, Zhang J

pubmed logopapersJun 8 2025
MRI, as a mature diagnostic method in clinical application, is favored by doctors and patients, there are also insurmountable bottleneck problems. AI strategies such as multimodal imaging integration and machine learning are used to build an intelligent multimodal imaging system based on MRI data to solve the unmet clinical needs in various medical environments. This review systematically discusses the development of MRI-guided multimodal imaging systems and the application of intelligent multimodal imaging systems integrated with artificial intelligence in the early diagnosis of brain and cardiovascular diseases. The safe and effective deployment of AI in clinical diagnostic equipment can help enhance early accurate diagnosis and personalized patient care.

A review of multimodal fusion-based deep learning for Alzheimer's disease.

Zhang R, Sheng J, Zhang Q, Wang J, Wang B

pubmed logopapersJun 7 2025
Alzheimer's Disease (AD) as one of the most prevalent neurodegenerative disorders worldwide, characterized by significant memory and cognitive decline in its later stages, severely impacting daily lives. Consequently, early diagnosis and accurate assessment are crucial for delaying disease progression. In recent years, multimodal imaging has gained widespread adoption in AD diagnosis and research, particularly the combined use of Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET). The complementarity of these modalities in structural and metabolic information offers a unique advantage for comprehensive disease understanding and precise diagnosis. With the rapid advancement of deep learning techniques, efficient fusion of MRI and PET multimodal data has emerged as a prominent research focus. This review systematically surveys the latest advancements in deep learning-based multimodal fusion of MRI and PET images for AD research, with a particular focus on studies published in the past five years (2021-2025). It first introduces the main sources of AD-related data, along with data preprocessing and feature extraction methods. Then, it summarizes performance metrics and multimodal fusion techniques. Next, it explores the application of various deep learning models and their variants in multimodal fusion tasks. Finally, it analyzes the key challenges currently faced in the field, including data scarcity and imbalance, inter-institutional data heterogeneity, etc., and discusses potential solutions and future research directions. This review aims to provide systematic guidance for researchers in the field of MRI and PET multimodal fusion, with the ultimate goal of advancing the development of early AD diagnosis and intervention strategies.

Current utilization and impact of AI LVO detection tools in acute stroke triage: a multicenter survey analysis.

Darkhabani Z, Ezzeldin R, Delora A, Kass-Hout O, Alderazi Y, Nguyen TN, El-Ghanem M, Anwoju T, Ali Z, Ezzeldin M

pubmed logopapersJun 7 2025
Artificial intelligence (AI) tools for large vessel occlusion (LVO) detection are increasingly used in acute stroke triage to expedite diagnosis and intervention. However, variability in access and workflow integration limits their potential impact. This study assessed current usage patterns, access disparities, and integration levels across U.S. stroke programs. Cross-sectional, web-based survey of 97 multidisciplinary stroke care providers from diverse institutions. Descriptive statistics summarized demographics, AI tool usage, access, and integration. Two-proportion Z-tests assessed differences across institutional types. Most respondents (97.9%) reported AI tool use, primarily Viz AI and Rapid AI, but only 62.1% consistently used them for triage prior to radiologist interpretation. Just 37.5% reported formal protocol integration, and 43.6% had designated personnel for AI alert response. Access varied significantly across departments, and in only 61.7% of programs did all relevant team members have access. Formal implementation of the AI detection tools did not differ based on the certification (z = -0.2; <i>p</i> = 0.4) or whether the program was academic or community-based (z =-0.3; <i>p</i> = 0.3). AI-enabled LVO detection tools have the potential to improve stroke care and patient outcomes by expediting workflows and reducing treatment delays. This survey effectively evaluated current utilization of these tools and revealed widespread adoption alongside significant variability in access, integration, and workflow standardization. Larger, more diverse samples are needed to validate these findings across different hospital types, and further prospective research is essential to determine how formal integration of AI tools can enhance stroke care delivery, reduce disparities, and improve clinical outcomes.

Diagnostic performance of lumbar spine CT using deep learning denoising to evaluate disc herniation and spinal stenosis.

Park S, Kang JH, Moon SG

pubmed logopapersJun 7 2025
To evaluate the diagnostic performance of lumbar spine CT using deep learning denoising (DLD CT) for detecting disc herniation and spinal stenosis. This retrospective study included 47 patients (229 intervertebral discs from L1/2 to L5/S1; 18 men and 29 women; mean age, 69.1 ± 10.9 years) who underwent lumbar spine CT and MRI within 1 month. CT images were reconstructed using filtered back projection (FBP) and denoised using a deep learning algorithm (ClariCT.AI). Three radiologists independently evaluated standard CT and DLD CT at an 8-week interval for the presence of disc herniation, central canal stenosis, and neural foraminal stenosis. Subjective image quality and diagnostic confidence were also assessed using five-point Likert scales. Standard CT and DLD CT were compared using MRI as a reference standard. DLD CT showed higher sensitivity (60% (70/117) vs. 44% (51/117); p < 0.001) and similar specificity (94% (534/570) vs. 94% (538/570); p = 0.465) for detecting disc herniation. Specificity for detecting spinal canal stenosis and neural foraminal stenosis was higher in DLD CT (90% (487/540) vs. 86% (466/540); p = 0.003, 94% (1202/1272) vs. 92% (1171/1272); p < 0.001), while sensitivity was comparable (81% (119/147) vs. 77% (113/147); p = 0.233, 83% (85/102) vs. 81% (83/102); p = 0.636). Image quality and diagnostic confidence were superior for DLD CT (all comparisons, p < 0.05). Compared to standard CT, DLD CT can improve diagnostic performance in detecting disc herniation and spinal stenosis with superior image quality and diagnostic confidence. Question The accurate diagnosis of disc herniation and spinal stenosis is limited on lumbar spine CT because of the low soft-tissue contrast. Findings Lumbar spine CT using deep learning denoising (DLD CT) demonstrated superior diagnostic performance in detecting disc herniation and spinal stenosis compared to standard CT. Clinical relevance DLD CT can be used as a simple and cost-effective screening test.
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