Accelerating 3D radial MPnRAGE using a self-supervised deep factor model.
Authors
Affiliations (6)
Affiliations (6)
- Electrical and Computer Engineering, University of Virginia, Charlottesville, Virginia, USA.
- Waisman Center, University of Wisconsin-Madison, Madison, Wisconsin, USA.
- Department of Radiology, University of Iowa, Iowa City, Iowa, USA.
- Biomedical Engineering and Hawk-IDDRC, University of Iowa, Iowa City, Iowa, USA.
- Champaign Imaging LLC, Shoreview, Minnesota, USA.
- Department of Psychiatry, University of Iowa, Iowa City, Iowa, USA.
Abstract
To develop a self-supervised and memory-efficient deep learning image reconstruction method for 4D non-Cartesian MRI with high resolution and a large parametric dimension. The deep factor model (DFM) represents a parametric series of 3D multicontrast images using a neural network conditioned by the inversion time using efficient zero-filled reconstructions as input estimates. The model parameters are learned in a single-shot learning (SSL) fashion from the k-space data of each acquisition. A compatible transfer learning (TL) approach using previously acquired data is also developed to reduce reconstruction time. The DFM is compared to subspace methods with different regularization strategies in a series of phantom and in vivo experiments using the MPnRAGE acquisition for multicontrast <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics> <mrow> <msub><mrow><mi>T</mi></mrow> <mrow><mn>1</mn></mrow> </msub> </mrow> <annotation>$$ {T}_1 $$</annotation></semantics> </math> imaging and quantitative <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics> <mrow> <msub><mrow><mi>T</mi></mrow> <mrow><mn>1</mn></mrow> </msub> </mrow> <annotation>$$ {T}_1 $$</annotation></semantics> </math> estimation. DFM-SSL improved the image quality and reduced bias and variance in quantitative <math xmlns="http://www.w3.org/1998/Math/MathML"> <semantics> <mrow> <msub><mrow><mi>T</mi></mrow> <mrow><mn>1</mn></mrow> </msub> </mrow> <annotation>$$ {T}_1 $$</annotation></semantics> </math> estimates in both phantom and in vivo studies, outperforming all other tested methods. DFM-TL reduced the inference time while maintaining a performance comparable to DFM-SSL and outperforming subspace methods with multiple regularization techniques. The proposed DFM offers a superior representation of the multicontrast images compared to subspace models, especially in the highly accelerated MPnRAGE setting. The self-supervised training is ideal for methods with both high resolution and a large parametric dimension, where training neural networks can become computationally demanding without a dedicated high-end GPU array.